Assembly
ASM164660v1
BioProject PRJNA314015 · BioSample SAMN04527051
GENOME-RESOLVED EVIDENCE
GCA_001646605.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4597202 bp · GC 28.500%
Completeness 95.940% · contamination 1.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAZ909_04360 | ANF13299.1 | OG0000061 | CP014704.1:947401–948747 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCAZ909_05520 | ANF13520.1 | OG0000061 | CP014704.1:1224824–1226176 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhAZ909_05170 | ANF13452.1 | OG0000131 | CP014704.1:1147366–1148319 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAZ909_07810 | ANF13957.1 | OG0000131 | CP014704.1:1746954–1747907 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAZ909_13430 | ANF15013.1 | OG0000131 | CP014704.1:2974378–2975316 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAZ909_16800 | ANF15731.1 | OG0000131 | CP014705.1:3421–4365 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBAZ909_04355 | ANF13298.1 | OG0000212 | CP014704.1:946897–947358 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdAZ909_01655 | ANF12810.1 | OG0000229 | CP014704.1:356070–356918 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlAZ909_02225 | ANF12896.1 | OG0000234 | CP014704.1:470033–471214 + | acetyl-CoA acetyltransferase [Clostridium butyricum] |
| adhEAZ909_16120 | ANF15511.1 | OG0001124 | CP014704.1:3655620–3658250 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPAZ909_07335 | ANF13866.1 | OG0001228 | CP014704.1:1630159–1631700 + | lactate permease [Clostridium butyricum] |
| crtAZ909_01635 | ANF12806.1 | OG0001394 | CP014704.1:352069–352854 + | crotonase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.