Assembly
ASM167970v1
BioProject PRJNA326183 · BioSample SAMN05271368
GENOME-RESOLVED EVIDENCE
GCA_001679705.1
Clostridium tyrobutyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3074042 bp · GC 31.000%
Completeness 98.760% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCBA182_06000 | ANP69242.1 | OG0000061 | CP016280.1:1249943–1251286 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| accCBA182_13950 | ANP70728.1 | OG0000061 | CP016280.1:2897403–2898755 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| fabZBA182_11370 | ANP70256.1 | OG0000119 | CP016280.1:2365728–2367413 - | 3-hydroxyacyl-ACP dehydratase [Clostridium tyrobutyricum] |
| ldhBA182_03350 | ANP68741.1 | OG0000131 | CP016280.1:704507–705478 + | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| ldhBA182_05080 | ANP69066.1 | OG0000131 | CP016280.1:1048464–1049411 - | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| accBBA182_05995 | ANP69241.1 | OG0000212 | CP016280.1:1249497–1249940 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tyrobutyricum] |
| hbdBA182_07260 | ANP69475.1 | OG0000229 | CP016280.1:1524926–1525861 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tyrobutyricum] |
| hbdBA182_12125 | ANP70390.1 | OG0000229 | CP016280.1:2513588–2514436 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tyrobutyricum] |
| thlBA182_00535 | ANP68214.1 | OG0000234 | CP016280.1:113189–114370 + | acetyl-CoA acetyltransferase [Clostridium tyrobutyricum] |
| thlBA182_10100 | ANP70022.1 | OG0000234 | CP016280.1:2110855–2112009 - | acetyl-CoA acetyltransferase [Clostridium tyrobutyricum] |
| lctPBA182_06950 | ANP69416.1 | OG0001228 | CP016280.1:1448900–1450426 - | lactate permease [Clostridium tyrobutyricum] |
| crtBA182_12145 | ANP70394.1 | OG0001394 | CP016280.1:2517479–2518258 - | crotonase [Clostridium tyrobutyricum] |
| fabGBA182_05440 | ANP69135.1 | OG0001499 | CP016280.1:1129368–1130063 + | 3-oxoacyl-ACP reductase [Clostridium tyrobutyricum] |
| crtBA182_12960 | ANP70549.1 | OG0001639 | CP016280.1:2709793–2710569 - | crotonase [Clostridium tyrobutyricum] |
| crtBA182_07365 | ANP69494.1 | OG0003747 | CP016280.1:1551834–1552256 - | enoyl-CoA hydratase [Clostridium tyrobutyricum] |
| fabZBA182_11375 | ANP70257.1 | OG0004330 | CP016280.1:2367410–2368684 - | 3-hydroxyacyl-ACP dehydratase [Clostridium tyrobutyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.