Assembly
ASM173576v2
BioProject PRJNA339855 · BioSample SAMN05608059
GENOME-RESOLVED EVIDENCE
GCA_001735765.2
Clostridium taeniosporum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3503506 bp · GC 26.500%
Completeness 98.550% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCBGI42_07390 | AOR23567.1 | OG0000037 | CP017253.2:1595765–1597090 + | electron transport complex protein RnfC [Clostridium taeniosporum] |
| accCBGI42_05285 | AOR23174.1 | OG0000061 | CP017253.2:1112502–1113854 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium taeniosporum] |
| ldhBGI42_10175 | AOR24075.1 | OG0000131 | CP017253.2:2231785–2232735 - | L-lactate dehydrogenase [Clostridium taeniosporum] |
| hbdBGI42_01695 | AOR22520.1 | OG0000229 | CP017253.2:351084–351932 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium taeniosporum] |
| thlBGI42_02220 | AOR22599.1 | OG0000234 | CP017253.2:451802–452983 + | acetyl-CoA C-acetyltransferase [Clostridium taeniosporum] |
| accABGI42_05295 | AOR23176.1 | OG0000885 | CP017253.2:1114715–1115539 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium taeniosporum] |
| adhEBGI42_08675 | AOR23795.1 | OG0001124 | CP017253.2:1892935–1895565 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium taeniosporum] |
| lctPBGI42_01620 | AOR24889.2 | OG0001228 | CP017253.2:333178–334701 + | lactate permease [Clostridium taeniosporum] |
| crtBGI42_01675 | AOR22516.1 | OG0001394 | CP017253.2:347170–347952 + | crotonase [Clostridium taeniosporum] |
| fabGBGI42_05310 | AOR23179.1 | OG0004652 | CP017253.2:1117525–1118325 + | 3-oxoacyl-ACP reductase [Clostridium taeniosporum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.