Assembly
ASM174655v1
BioProject PRJNA327147 · BioSample SAMN05323103
GENOME-RESOLVED EVIDENCE
GCA_001746555.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4463546 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCBBB49_04545 | AOR93369.1 | OG0000061 | CP016332.1:965308–966654 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCBBB49_05705 | AOR93588.1 | OG0000061 | CP016332.1:1242740–1244092 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhBBB49_05355 | AOR93521.1 | OG0000131 | CP016332.1:1165279–1166232 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhBBB49_07990 | AOR94025.1 | OG0000131 | CP016332.1:1763086–1764039 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhBBB49_13315 | AOR95022.1 | OG0000131 | CP016332.1:2948887–2949825 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhBBB49_19770 | AOR96298.1 | OG0000131 | CP016333.1:757041–757985 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBBBB49_04540 | AOR93368.1 | OG0000212 | CP016332.1:964804–965265 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdBBB49_01755 | AOR92879.1 | OG0000229 | CP016332.1:372316–373164 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlBBB49_02365 | AOR92966.1 | OG0000234 | CP016332.1:487019–488200 + | acetyl-CoA acetyltransferase [Clostridium butyricum] |
| adhEBBB49_15730 | AOR95459.1 | OG0001124 | CP016332.1:3541443–3544073 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPBBB49_07515 | AOR93935.1 | OG0001228 | CP016332.1:1646288–1647829 + | lactate permease [Clostridium butyricum] |
| crtBBB49_01735 | AOR92875.1 | OG0001394 | CP016332.1:368315–369100 + | crotonase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.