Assembly
ASM185408v1
BioProject PRJNA299533 · BioSample SAMN04209542
GENOME-RESOLVED EVIDENCE
GCA_001854085.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3343822 bp · GC 28.500%
Completeness 96.480% · contamination 3.910%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| rnfB | Rnf complex subunit B | 1 |
| rnfC | Rnf complex subunit C | 1 |
| rnfD | Rnf complex subunit D | 1 |
| rnfE | Rnf complex subunit E | 1 |
| rnfG | Rnf complex subunit G | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdFORC25_0098 | AOY52522.1 | OG0000034 | CP013101.1:143267–144403 + | Butyryl-CoA dehydrogenase [Clostridium perfringens] |
| rnfCFORC25_1764 | AOY54177.1 | OG0000037 | CP013101.1:1962946–1964256 + | Electron transport complex protein RnfC [Clostridium perfringens] |
| ldhFORC25_0104 | AOY52528.1 | OG0000131 | CP013101.1:151380–152333 - | L-lactate dehydrogenase [Clostridium perfringens] |
| hbdFORC25_2671 | AOY55083.1 | OG0000229 | CP013101.1:2951835–2952683 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlFORC25_2552 | AOY54964.1 | OG0000234 | CP013101.1:2820558–2821736 - | Acetyl-CoA acetyltransferase [Clostridium perfringens] |
| lctPFORC25_0313 | AOY52735.1 | OG0001228 | CP013101.1:400243–401751 + | L-lactate permease [Clostridium perfringens] |
| rnfGFORC25_1387 | AOY53802.1 | OG0001254 | CP013101.1:1555192–1556226 + | Electron transport complex protein RnfG [Clostridium perfringens] |
| bcdFORC25_2674 | AOY55086.1 | OG0001311 | CP013101.1:2954624–2955763 - | Butyryl-CoA dehydrogenase [Clostridium perfringens] |
| rnfEFORC25_1388 | AOY53803.1 | OG0001320 | CP013101.1:1556244–1556912 + | Electron transport complex protein RnfE [Clostridium perfringens] |
| rnfAFORC25_1389 | AOY53804.1 | OG0001328 | CP013101.1:1556941–1557516 + | Electron transport complex protein RnfA [Clostridium perfringens] |
| rnfDFORC25_1765 | AOY54178.1 | OG0001342 | CP013101.1:1964270–1965250 + | Electron transport complex protein RnfD [Clostridium perfringens] |
| rnfBFORC25_1390 | AOY53805.1 | OG0001429 | CP013101.1:1557533–1558363 + | Electron transport complex protein RnfB [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.