Assembly
ASM185664v1
BioProject PRJNA299496 · BioSample SAMN04208873
GENOME-RESOLVED EVIDENCE
GCA_001856645.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4352852 bp · GC 30.000%
Completeness 98.540% · contamination 0.810%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAQ983_19235 | AOZ77125.1 | OG0000061 | CP013018.1:4222371–4223714 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| ldhAQ983_08495 | AOZ75115.1 | OG0000131 | CP013018.1:1893665–1894609 - | L-lactate dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| ldhAQ983_13415 | AOZ76042.1 | OG0000131 | CP013018.1:2950342–2951184 - | L-lactate dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| accBAQ983_19245 | AOZ77127.1 | OG0000212 | CP013018.1:4224421–4224921 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbdAQ983_08750 | AOZ75164.1 | OG0000229 | CP013018.1:1941748–1942686 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbdAQ983_13890 | AOZ76134.1 | OG0000229 | CP013018.1:3063412–3064260 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlAQ983_04175 | AOZ74340.1 | OG0000234 | CP013018.1:946896–948074 + | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlAQ983_17350 | AOZ76780.1 | OG0000234 | CP013018.1:3834834–3836012 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| accDAQ983_19230 | AOZ77124.1 | OG0000403 | CP013018.1:4221408–4222271 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| fabZAQ983_19240 | AOZ77126.1 | OG0000785 | CP013018.1:4223925–4224350 - | 3-hydroxyacyl-ACP dehydratase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| accAAQ983_19225 | AOZ77123.1 | OG0000885 | CP013018.1:4220469–4221287 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| lctPAQ983_11575 | AOZ75693.1 | OG0001228 | CP013018.1:2550924–2552447 - | lactate permease [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| crtAQ983_13910 | AOZ76138.1 | OG0001394 | CP013018.1:3067384–3068172 - | crotonase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| fabGAQ983_13610 | AOZ76081.1 | OG0001499 | CP013018.1:2999819–3000517 - | 3-oxoacyl-ACP reductase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| crtAQ983_05315 | AOZ74552.1 | OG0001639 | CP013018.1:1183937–1184713 + | crotonase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| crtAQ983_19425 | AOZ77155.1 | OG0003747 | CP013018.1:4255200–4255631 + | enoyl-CoA hydratase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.