Assembly
ASM185669v1
BioProject PRJNA299496 · BioSample SAMN04208905
GENOME-RESOLVED EVIDENCE
GCA_001856695.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4351863 bp · GC 30.000%
Completeness 98.540% · contamination 0.810%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAQ984_19230 | AOZ80922.1 | OG0000061 | CP013019.1:4221382–4222725 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium pasteurianum] |
| ldhAQ984_08485 | AOZ78910.1 | OG0000131 | CP013019.1:1892700–1893644 - | L-lactate dehydrogenase [Clostridium pasteurianum] |
| ldhAQ984_13410 | AOZ79838.1 | OG0000131 | CP013019.1:2949353–2950195 - | L-lactate dehydrogenase [Clostridium pasteurianum] |
| accBAQ984_19240 | AOZ80924.1 | OG0000212 | CP013019.1:4223432–4223932 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium pasteurianum] |
| hbdAQ984_08740 | AOZ78959.1 | OG0000229 | CP013019.1:1940783–1941721 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum] |
| hbdAQ984_13885 | AOZ79930.1 | OG0000229 | CP013019.1:3062423–3063271 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum] |
| thlAQ984_04180 | AOZ78138.1 | OG0000234 | CP013019.1:946897–948075 + | acetyl-CoA acetyltransferase [Clostridium pasteurianum] |
| thlAQ984_17345 | AOZ80577.1 | OG0000234 | CP013019.1:3833845–3835023 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum] |
| accDAQ984_19225 | AOZ80921.1 | OG0000403 | CP013019.1:4220419–4221282 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium pasteurianum] |
| fabZAQ984_19235 | AOZ80923.1 | OG0000785 | CP013019.1:4222936–4223361 - | 3-hydroxyacyl-ACP dehydratase [Clostridium pasteurianum] |
| accAAQ984_19220 | AOZ80920.1 | OG0000885 | CP013019.1:4219480–4220298 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium pasteurianum] |
| lctPAQ984_11570 | AOZ79489.1 | OG0001228 | CP013019.1:2549935–2551458 - | lactate permease [Clostridium pasteurianum] |
| crtAQ984_13905 | AOZ79934.1 | OG0001394 | CP013019.1:3066395–3067183 - | crotonase [Clostridium pasteurianum] |
| fabGAQ984_13605 | AOZ79877.1 | OG0001499 | CP013019.1:2998830–2999528 - | 3-oxoacyl-ACP reductase [Clostridium pasteurianum] |
| crtAQ984_05305 | AOZ78349.1 | OG0001639 | CP013019.1:1182971–1183747 + | crotonase [Clostridium pasteurianum] |
| crtAQ984_19420 | AOZ80952.1 | OG0003747 | CP013019.1:4254211–4254642 + | enoyl-CoA hydratase [Clostridium pasteurianum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.