Assembly
ASM187703v1
BioProject PRJNA320887 · BioSample SAMN04958870
GENOME-RESOLVED EVIDENCE
GCA_001877035.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4785613 bp · GC 31.000%
Completeness 99.070% · contamination 2.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 4 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCA7L45_10985 | APC40556.1 | OG0000061 | CP015756.1:2431264–2432610 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCA7L45_21625 | APC42455.1 | OG0000061 | CP015756.1:4707041–4708387 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhA7L45_03225 | APC39145.1 | OG0000131 | CP015756.1:680069–681016 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhA7L45_16920 | APC41631.1 | OG0000131 | CP015756.1:3667060–3668007 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| hbdA7L45_01620 | APC38856.1 | OG0000229 | CP015756.1:337611–338459 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlA7L45_02400 | APC38996.1 | OG0000234 | CP015756.1:502430–503611 + | acetyl-CoA acetyltransferase [Clostridium estertheticum] |
| thlA7L45_14970 | APC41286.1 | OG0000234 | CP015756.1:3243628–3244803 + | acetyl-CoA acetyltransferase [Clostridium estertheticum] |
| adhEA7L45_07240 | APC39878.1 | OG0001124 | CP015756.1:1569654–1572275 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPA7L45_05820 | APC39618.1 | OG0001228 | CP015756.1:1252423–1253946 + | lactate permease [Clostridium estertheticum] |
| crtA7L45_01600 | APC38852.1 | OG0001394 | CP015756.1:333664–334443 + | crotonase [Clostridium estertheticum] |
| crtA7L45_09170 | APC40223.1 | OG0001639 | CP015756.1:2025244–2026020 + | crotonase [Clostridium estertheticum] |
| crtA7L45_02280 | APC38972.1 | OG0003747 | CP015756.1:473635–474051 - | enoyl-CoA hydratase [Clostridium estertheticum] |
| crtA7L45_02305 | APC38977.1 | OG0003747 | CP015756.1:480594–481010 - | enoyl-CoA hydratase [Clostridium estertheticum] |
| adhEA7L45_08380 | APC40085.1 | OG0019615 | CP015756.1:1813097–1815685 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.