Assembly
ASM187960v1
BioProject PRJNA301978 · BioSample SAMN04262333
GENOME-RESOLVED EVIDENCE
GCA_001879605.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4089027 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhNPD2_41 | APC78520.1 | OG0000131 | CP013246.1:45022–45978 - | L-lactate dehydrogenase [Clostridium botulinum] |
| thlANPD2_1736 | APC79413.1 | OG0000234 | CP013246.1:1851819–1852997 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accDNPD2_2199 | APC78697.1 | OG0000403 | CP013246.1:2311538–2312407 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum] |
| accANPD2_2198 | APC82079.1 | OG0000885 | CP013246.1:2310652–2311491 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum] |
| lctPNPD2_3350 | APC80252.1 | OG0001228 | CP013246.1:3573749–3575272 + | transporter, lactate permease family protein [Clostridium botulinum] |
| crtNPD2_1738 | APC78708.1 | OG0001639 | CP013246.1:1853883–1854665 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.