Assembly
ASM187962v1
BioProject PRJNA301988 · BioSample SAMN04262350
GENOME-RESOLVED EVIDENCE
GCA_001879625.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4020063 bp · GC 28.000%
Completeness 99.490% · contamination 0.850%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhNPD12_1762 | APC84551.1 | OG0000131 | CP014148.1:1874612–1875568 - | L-lactate dehydrogenase [Clostridium botulinum] |
| thlANPD12_3311 | APC82730.1 | OG0000234 | CP014148.1:3558941–3560119 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accDNPD12_64 | APC84832.1 | OG0000403 | CP014148.1:63553–64422 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum] |
| accANPD12_63 | APC82795.1 | OG0000885 | CP014148.1:62667–63506 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum] |
| lctPNPD12_1195 | APC82596.1 | OG0001228 | CP014148.1:1274089–1275612 + | transporter, lactate permease family protein [Clostridium botulinum] |
| crtNPD12_3313 | APC84884.1 | OG0001639 | CP014148.1:3561005–3561787 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.