Assembly
ASM188677v1
BioProject PRJNA301983 · BioSample SAMN04262346
GENOME-RESOLVED EVIDENCE
GCA_001886775.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4352205 bp · GC 28.000%
Completeness 94.920% · contamination 4.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhNPD7_1519 | APF28061.1 | OG0000131 | CP013242.1:1647600–1648556 + | L-lactate dehydrogenase [Clostridium sporogenes] |
| thlANPD7_3666 | APF25745.1 | OG0000234 | CP013242.1:3938465–3939643 + | acetyl-CoA acetyltransferase [Clostridium sporogenes] |
| accDNPD7_3203 | APF26239.1 | OG0000403 | CP013242.1:3472707–3473576 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium sporogenes] |
| accANPD7_3204 | APF28617.1 | OG0000885 | CP013242.1:3473623–3474462 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium sporogenes] |
| lctPNPD7_2063 | APF27946.1 | OG0001228 | CP013242.1:2251152–2252675 - | transporter, lactate permease family protein [Clostridium sporogenes] |
| crtNPD7_3664 | APF27404.1 | OG0001639 | CP013242.1:3936808–3937590 + | enoyl-CoA hydratase/isomerase family protein [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.