Assembly
ASM188932v1
BioProject PRJNA301982 · BioSample SAMN04262345
GENOME-RESOLVED EVIDENCE
GCA_001889325.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4393047 bp · GC 28.000%
Completeness 93.900% · contamination 6.430%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhNPD5_515 | APH16371.1 | OG0000131 | CP013243.1:553844–554800 + | L-lactate dehydrogenase [Clostridium sporogenes] |
| thlANPD5_2714 | APH15628.1 | OG0000234 | CP013243.1:2876417–2877595 + | acetyl-CoA acetyltransferase [Clostridium sporogenes] |
| accDNPD5_2238 | APH13601.1 | OG0000403 | CP013243.1:2406523–2407392 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium sporogenes] |
| accANPD5_2239 | APH13270.1 | OG0000885 | CP013243.1:2407439–2408278 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium sporogenes] |
| lctPNPD5_1049 | APH16645.1 | OG0001228 | CP013243.1:1150486–1152009 - | transporter, lactate permease family protein [Clostridium sporogenes] |
| crtNPD5_2712 | APH15467.1 | OG0001639 | CP013243.1:2874760–2875542 + | enoyl-CoA hydratase/isomerase family protein [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.