Assembly
ASM188934v1
BioProject PRJNA301979 · BioSample SAMN04262334
GENOME-RESOLVED EVIDENCE
GCA_001889345.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3867627 bp · GC 28.000%
Completeness 99.490% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhNPD3_360 | APH19770.1 | OG0000131 | CP013247.1:402742–403698 - | L-lactate dehydrogenase [Clostridium botulinum] |
| thlANPD3_1832 | APH18004.1 | OG0000234 | CP013247.1:2038566–2039744 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accDNPD3_2333 | APH18706.1 | OG0000403 | CP013247.1:2514687–2515556 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum] |
| accANPD3_2332 | APH19103.1 | OG0000885 | CP013247.1:2513801–2514640 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum] |
| lctPNPD3_3433 | APH17444.1 | OG0001228 | CP013247.1:3726999–3728522 + | transporter, lactate permease family protein [Clostridium botulinum] |
| crtNPD3_1834 | APH18097.1 | OG0001639 | CP013247.1:2040619–2041401 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.