Assembly
ASM190229v1
BioProject PRJNA355892 · BioSample SAMN06094710
GENOME-RESOLVED EVIDENCE
GCA_001902295.1
Clostridium kluyveri · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4512934 bp · GC 31.500%
Completeness 87.240% · contamination 15.600%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCBS101_01165 | APM37463.1 | OG0000061 | CP018335.1:191877–193220 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium kluyveri] |
| accBBS101_03495 | APM37867.1 | OG0000212 | CP018335.1:656634–656852 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium kluyveri] |
| hbdBS101_02965 | APM41175.1 | OG0000229 | CP018335.1:546095–546937 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium kluyveri] |
| hbdBS101_15655 | APM40071.1 | OG0000229 | CP018335.1:3249864–3250823 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium kluyveri] |
| thlBS101_21010 | APM41003.1 | OG0000234 | CP018335.1:4285218–4286399 - | acetyl-CoA acetyltransferase [Clostridium kluyveri] |
| thlBS101_21015 | APM41004.1 | OG0000234 | CP018335.1:4287134–4288309 - | acetyl-CoA acetyltransferase [Clostridium kluyveri] |
| thlBS101_21025 | APM41005.1 | OG0000234 | CP018335.1:4289167–4290342 - | acetyl-CoA acetyltransferase [Clostridium kluyveri] |
| adhEBS101_09855 | APM39028.1 | OG0001124 | CP018335.1:2029316–2031949 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium kluyveri] |
| crtBS101_02945 | APM37773.1 | OG0001394 | CP018335.1:541976–542755 + | crotonase [Clostridium kluyveri] |
| fabGBS101_13465 | APM39673.1 | OG0001499 | CP018335.1:2813364–2814059 - | 3-oxoacyl-ACP reductase [Clostridium kluyveri] |
| crtBS101_16595 | APM40240.1 | OG0003747 | CP018335.1:3436854–3437270 - | enoyl-CoA hydratase [Clostridium kluyveri] |
| crtBS101_14215 | APM39807.1 | OG0016066 | CP018335.1:2966992–2967765 + | enoyl-CoA hydratase [Clostridium kluyveri] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.