Assembly
ASM192194v1
BioProject PRJNA302044 · BioSample SAMN04263494
GENOME-RESOLVED EVIDENCE
GCA_001921945.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4194523 bp · GC 28.000%
Completeness 99.490% · contamination 0.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhRSJ10_1721 | APQ78041.1 | OG0000131 | CP013683.1:1867040–1867996 - | L-lactate dehydrogenase [Clostridium botulinum] |
| thlARSJ10_3306 | APQ75006.1 | OG0000234 | CP013683.1:3581944–3583122 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accDRSJ10_86 | APQ78356.1 | OG0000403 | CP013683.1:81174–82043 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum] |
| accARSJ10_85 | APQ76213.1 | OG0000885 | CP013683.1:80288–81127 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum] |
| lctPRSJ10_1230 | APQ75734.1 | OG0001228 | CP013683.1:1321856–1323379 + | transporter, lactate permease family protein [Clostridium botulinum] |
| crtRSJ10_3308 | APQ78533.1 | OG0001639 | CP013683.1:3584008–3584790 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.