Assembly
SSP
BioProject PRJNA310725 · BioSample SAMN04455154
GENOME-RESOLVED EVIDENCE
GCA_001941975.2
Sporomusa sphaeroides DSM 2875 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5015343 bp · GC 47.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| bcdWP_075756109.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 599.000 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_075752291.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 596.900 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| etfAWP_075752287.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 456.200 / 0.97900 | Bridge orthogroup OG0001385 |
| etfAWP_075756107.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 456.000 / 0.98200 | Bridge orthogroup OG0001385 |
| etfAWP_075753349.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 450.600 / 0.97900 | Bridge orthogroup OG0001385 |
| etfAWP_075755775.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 443.900 / 0.98800 | Bridge orthogroup OG0001385 |
| etfAWP_075755782.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 438.000 / 0.97600 | Bridge orthogroup OG0002903 |
| etfBWP_075756108.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 386.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_075755776.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 384.500 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_075752289.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 384.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_075753347.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 375.300 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_075755781.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 355.000 / 0.99600 | Bridge orthogroup OG0002348 |
| fabDWP_075754963.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 393.400 / 0.98700 | Annotation: gene_symbol |
| fabFWP_075754971.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 665.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_075754965.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 283.300 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_075757254.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 165.500 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_075756111.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 341.000 / 0.99300 | Bridge orthogroup OG0000153 |
| hbdWP_075756104.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 247.000 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_075757783.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 444.000 / 0.99000 | Bridge orthogroup OG0000731 |
| lctPWP_075754421.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 431.800 / 0.98400 | Bridge orthogroup OG0000731 |
| lctPWP_075756653.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 370.100 / 0.97200 | Bridge orthogroup OG0000731 |
| ldhWP_075753995.1 · malate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 249.600 / 0.97200 | Bridge orthogroup OG0001800 |
| rnfAWP_075754585.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 270.700 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_233138728.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 337.700 / 0.92900 | Bridge orthogroup OG0001404 |
| rnfCWP_075754579.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 414.400 / 0.74800 | Bridge orthogroup OG0001114 |
| rnfDWP_075754581.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 501.000 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_223226006.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 272.300 / 0.96200 | Bridge orthogroup OG0001153 |
| rnfGWP_075754583.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 149.300 / 0.90700 | Bridge orthogroup OG0001292 |
| thlWP_075753365.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 494.200 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_075754222.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 517.200 / 0.98400 | Profile only |
| bcdWP_075753371.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 580.700 / 1.00000 | Profile only |
| bcdWP_075755512.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 488.400 / 0.99700 | Profile only |
| bcdWP_075756907.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 421.500 / 0.99200 | Profile only |
| bcdWP_075756671.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 362.300 / 0.99700 | Profile only |
| crtWP_075756106.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 385.900 / 0.99600 | Annotation: specific_product_name |
| crtWP_075753369.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 359.400 / 0.99600 | Annotation: specific_product_name |
| etfAWP_075756673.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 206.800 / 0.92300 | Profile only |
| fabGWP_075752303.1 · beta-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 246.500 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_075753357.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 228.400 / 0.98000 | Profile only |
| fabGWP_075753007.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.600 / 0.98400 | Profile only |
| fabGWP_075757550.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.800 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_075755421.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.500 / 0.98800 | Profile only |
| fabHWP_075754959.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 344.400 / 0.99400 | Profile only |
| fabHWP_075756511.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 342.300 / 0.99400 | Profile only |
| fabKWP_233138917.1 · DUF561 domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 441.300 / 0.92400 | Profile only |
| fabKWP_075752724.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 409.300 / 0.98400 | Profile only |
| fabKWP_075754969.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 263.000 / 0.93300 | Profile only |
| fabLWP_075753357.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.700 / 0.97200 | Profile only |
| fabLWP_075752303.1 · beta-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 196.400 / 0.98800 | Profile only |
| fabLWP_075757550.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.900 / 0.97200 | Profile only |
| fabLWP_075753007.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.100 / 0.97200 | Profile only |
| fabLWP_075755421.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.500 / 0.97200 | Profile only |
| hbdWP_075752283.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 413.100 / 1.00000 | Profile only |
| hbdWP_075756117.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.600 / 0.99600 | Profile only |
| hbdWP_075753367.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 404.700 / 0.99600 | Profile only |
| rnfCWP_075753935.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 499.800 / 0.99100 | Profile only |
| thlWP_075752293.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 617.800 / 0.99700 | Profile only |
| thlWP_075756116.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 609.000 / 0.99700 | Profile only |
| fabLWP_075754965.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 221.900 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.