Assembly
ASM199107v2
BioProject PRJNA301987 · BioSample SAMN04262349
GENOME-RESOLVED EVIDENCE
GCA_001991075.2
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3211717 bp · GC 28.500%
Completeness 98.760% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNPD11_495 | AQM60053.1 | OG0000061 | CP014204.2:1431516–1432868 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| fabZNPD11_578 | AQM61024.1 | OG0000119 | CP014204.2:1342866–1344530 + | 3-hydroxyacyl-ACP dehydratase [Clostridium baratii] |
| ldhNPD11_2114 | AQM60973.1 | OG0000131 | CP014204.2:2872651–2873601 - | L-lactate dehydrogenase [Clostridium baratii] |
| ldhNPD11_976 | AQM61411.1 | OG0000131 | CP014204.2:949868–950818 + | L-lactate dehydrogenase [Clostridium baratii] |
| accBNPD11_497 | AQM59772.1 | OG0000212 | CP014204.2:1430576–1431082 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium baratii] |
| hbdNPD11_1526 | AQM59361.1 | OG0000229 | CP014204.2:400854–401702 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlNPD11_1396 | AQM60022.1 | OG0000234 | CP014204.2:521815–522993 + | acetyl-CoA acetyltransferase [Clostridium baratii] |
| lctPNPD11_1241 | AQM60670.1 | OG0001228 | CP014204.2:679232–680758 + | lactate permease [Clostridium baratii] |
| crtNPD11_1530 | AQM59286.1 | OG0001394 | CP014204.2:397002–397784 + | crotonase [Clostridium baratii] |
| fabZNPD11_579 | AQM60931.1 | OG0004330 | CP014204.2:1341596–1342864 + | 3-hydroxyacyl-ACP dehydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.