Assembly
ASM200328v1
BioProject PRJNA322799 · BioSample SAMN05170520
GENOME-RESOLVED EVIDENCE
GCA_002003285.1
Clostridium saccharobutylicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5108287 bp · GC 28.500%
Completeness 98.760% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCLOSC_12450 | AQR89542.1 | OG0000131 | CP016086.1:1425989–1426942 + | L-lactate dehydrogenase [Clostridium saccharobutylicum] |
| ldh1CLOSC_31440 | AQR91419.1 | OG0000131 | CP016086.1:3492446–3493396 - | L-lactate dehydrogenase 1 [Clostridium saccharobutylicum] |
| ldhBCLOSC_43370 | AQR92594.1 | OG0000131 | CP016086.1:4905949–4906896 - | L-lactate dehydrogenase 2 [Clostridium saccharobutylicum] |
| mmgBCLOSC_03540 | AQR88690.1 | OG0000229 | CP016086.1:382672–383520 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharobutylicum] |
| thlACLOSC_04960 | AQR88811.1 | OG0000234 | CP016086.1:530272–531453 + | acetyl-CoA acetyltransferase [Clostridium saccharobutylicum] |
| yhfSCLOSC_28050 | AQR91081.1 | OG0000234 | CP016086.1:3148411–3149547 - | putative acetyl-CoA C-acetyltransferase YhfS [Clostridium saccharobutylicum] |
| echA8_1CLOSC_03500 | AQR88686.1 | OG0001394 | CP016086.1:378660–379445 + | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
| echA8_2CLOSC_40630 | AQR92333.1 | OG0001639 | CP016086.1:4527452–4528228 - | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.