Assembly
ASM200330v1
BioProject PRJNA322814 · BioSample SAMN05170535
GENOME-RESOLVED EVIDENCE
GCA_002003305.1
Clostridium saccharoperbutylacetonicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6219394 bp · GC 29.500%
Completeness 99.380% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 6 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 4 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRCLSAP_41300 | AQR96806.1 | OG0000074 | CP016087.1:4431242–4431964 - | putative L-lactate dehydrogenase operon regulatory protein [Clostridium saccharoperbutylacetonicum] |
| ldhCLSAP_11010 | AQR93794.1 | OG0000131 | CP016087.1:1190462–1191415 + | L-lactate dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| ldh1_1CLSAP_33440 | AQR96026.1 | OG0000131 | CP016087.1:3546872–3547819 - | L-lactate dehydrogenase 1 [Clostridium saccharoperbutylacetonicum] |
| ldh1_2CLSAP_53220 | AQR97979.1 | OG0000131 | CP016087.1:5904111–5905058 - | L-lactate dehydrogenase 1 [Clostridium saccharoperbutylacetonicum] |
| mmgB_1CLSAP_04490 | AQR93172.1 | OG0000229 | CP016087.1:470808–471656 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| mmgB_2CLSAP_19150 | AQR94604.1 | OG0000229 | CP016087.1:2056226–2057071 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| mmgB_3CLSAP_20830 | AQR94769.1 | OG0000229 | CP016087.1:2259437–2260375 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| thlA_1CLSAP_06190 | AQR93325.1 | OG0000234 | CP016087.1:648863–650044 + | acetyl-CoA acetyltransferase [Clostridium saccharoperbutylacetonicum] |
| thlA_2CLSAP_16860 | AQR94379.1 | OG0000234 | CP016087.1:1816578–1817756 + | acetyl-CoA acetyltransferase [Clostridium saccharoperbutylacetonicum] |
| thlA_3CLSAP_18530 | AQR94542.1 | OG0000234 | CP016087.1:1985583–1985825 + | acetyl-CoA acetyltransferase [Clostridium saccharoperbutylacetonicum] |
| thlA_4CLSAP_18580 | AQR94547.1 | OG0000234 | CP016087.1:1988727–1989905 + | acetyl-CoA acetyltransferase [Clostridium saccharoperbutylacetonicum] |
| echA8CLSAP_04450 | AQR93168.1 | OG0001394 | CP016087.1:466861–467646 + | putative enoyl-CoA hydratase echA8 [Clostridium saccharoperbutylacetonicum] |
| lldD_1CLSAP_17640 | AQR94455.1 | OG0001572 | CP016087.1:1896333–1897319 + | L-lactate dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| lldD_2CLSAP_18500 | AQR94539.1 | OG0001572 | CP016087.1:1983000–1984022 + | L-lactate dehydrogenase [Clostridium saccharoperbutylacetonicum] |
| phaJCLSAP_19140 | AQR94603.1 | OG0003747 | CP016087.1:2055376–2055792 + | (R)-specific enoyl-CoA hydratase [Clostridium saccharoperbutylacetonicum] |
| crtCLSAP_47920 | AQR97468.1 | OG0003747 | CP016087.1:5250623–5251063 + | putative enoyl-CoA hydratase 1 [Clostridium saccharoperbutylacetonicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.