Assembly
ASM200332v1
BioProject PRJNA322798 · BioSample SAMN05170519
GENOME-RESOLVED EVIDENCE
GCA_002003325.1
Clostridium saccharobutylicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5108304 bp · GC 28.500%
Completeness 98.140% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCSACC_12530 | AQR99444.1 | OG0000131 | CP016089.1:1426600–1427553 + | L-lactate dehydrogenase [Clostridium saccharobutylicum] |
| ldh1CSACC_31510 | AQS01323.1 | OG0000131 | CP016089.1:3493058–3494008 - | L-lactate dehydrogenase 1 [Clostridium saccharobutylicum] |
| ldhBCSACC_43420 | AQS02496.1 | OG0000131 | CP016089.1:4906326–4907273 - | L-lactate dehydrogenase 2 [Clostridium saccharobutylicum] |
| mmgBCSACC_03540 | AQR98588.1 | OG0000229 | CP016089.1:382672–383520 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharobutylicum] |
| thlACSACC_05030 | AQR98710.1 | OG0000234 | CP016089.1:530883–532064 + | acetyl-CoA acetyltransferase [Clostridium saccharobutylicum] |
| yhfSCSACC_28120 | AQS00985.1 | OG0000234 | CP016089.1:3149023–3150159 - | putative acetyl-CoA C-acetyltransferase YhfS [Clostridium saccharobutylicum] |
| echA8_1CSACC_03500 | AQR98584.1 | OG0001394 | CP016089.1:378660–379445 + | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
| echA8_2CSACC_40680 | AQS02235.1 | OG0001639 | CP016089.1:4527829–4528605 - | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.