Assembly
ASM200334v1
BioProject PRJNA322805 · BioSample SAMN05170526
GENOME-RESOLVED EVIDENCE
GCA_002003345.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6123550 bp · GC 30.000%
Completeness 92.530% · contamination 5.690%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 5 |
| crt | crotonase/enoyl-CoA hydratase | 5 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldR_1CLBIJ_16220 | AQS04203.1 | OG0000074 | CP016090.1:1768145–1768831 - | putative L-lactate dehydrogenase operon regulatory protein [Clostridium beijerinckii] |
| lldR_2CLBIJ_43750 | AQS06925.1 | OG0000074 | CP016090.1:4808214–4808942 - | putative L-lactate dehydrogenase operon regulatory protein [Clostridium beijerinckii] |
| ldhCLBIJ_10290 | AQS03614.1 | OG0000131 | CP016090.1:1127853–1128803 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldh1CLBIJ_43510 | AQS06901.1 | OG0000131 | CP016090.1:4778989–4779939 - | L-lactate dehydrogenase 1 [Clostridium beijerinckii] |
| ldhBCLBIJ_52270 | AQS07767.1 | OG0000131 | CP016090.1:5879413–5880360 - | L-lactate dehydrogenase 2 [Clostridium beijerinckii] |
| mmgB_1CLBIJ_03390 | AQS02958.1 | OG0000229 | CP016090.1:351570–352418 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| mmgB_2CLBIJ_40630 | AQS06616.1 | OG0000229 | CP016090.1:4466160–4467107 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlA_1CLBIJ_04430 | AQS03045.1 | OG0000234 | CP016090.1:458403–459584 + | acetyl-CoA acetyltransferase [Clostridium beijerinckii] |
| thlA_2CLBIJ_38360 | AQS06389.1 | OG0000234 | CP016090.1:4197092–4198270 - | acetyl-CoA acetyltransferase [Clostridium beijerinckii] |
| echA8_1CLBIJ_03350 | AQS02954.1 | OG0001394 | CP016090.1:347548–348333 + | putative enoyl-CoA hydratase echA8 [Clostridium beijerinckii] |
| echA8_2CLBIJ_21480 | AQS04718.1 | OG0001394 | CP016090.1:2364903–2365688 + | putative enoyl-CoA hydratase echA8 [Clostridium beijerinckii] |
| echA8_3CLBIJ_48500 | AQS07400.1 | OG0001639 | CP016090.1:5382651–5383427 - | putative enoyl-CoA hydratase echA8 [Clostridium beijerinckii] |
| phaJ_1CLBIJ_21520 | AQS04722.1 | OG0003747 | CP016090.1:2368798–2369223 + | (R)-specific enoyl-CoA hydratase [Clostridium beijerinckii] |
| phaJ_2CLBIJ_35620 | AQS06119.1 | OG0003747 | CP016090.1:3937584–3938000 - | (R)-specific enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.