Assembly
ASM200336v1
BioProject PRJNA322800 · BioSample SAMN05170521
GENOME-RESOLVED EVIDENCE
GCA_002003365.1
Clostridium saccharobutylicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4950933 bp · GC 28.500%
Completeness 96.790% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCLOBY_12980 | AQS09175.1 | OG0000131 | CP016091.1:1448967–1449920 + | L-lactate dehydrogenase [Clostridium saccharobutylicum] |
| ldh1CLOBY_30820 | AQS10933.1 | OG0000131 | CP016091.1:3346072–3347022 - | L-lactate dehydrogenase 1 [Clostridium saccharobutylicum] |
| ldhBCLOBY_42710 | AQS12098.1 | OG0000131 | CP016091.1:4747863–4748810 - | L-lactate dehydrogenase 2 [Clostridium saccharobutylicum] |
| mmgBCLOBY_03690 | AQS08297.1 | OG0000229 | CP016091.1:388775–389623 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium saccharobutylicum] |
| thlACLOBY_05330 | AQS08432.1 | OG0000234 | CP016091.1:547770–548951 + | acetyl-CoA acetyltransferase [Clostridium saccharobutylicum] |
| yhfSCLOBY_28710 | AQS10723.1 | OG0000234 | CP016091.1:3110219–3111355 - | putative acetyl-CoA C-acetyltransferase YhfS [Clostridium saccharobutylicum] |
| echA8_1CLOBY_03650 | AQS08293.1 | OG0001394 | CP016091.1:384763–385548 + | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
| echA8_2CLOBY_39970 | AQS11839.1 | OG0001639 | CP016091.1:4370970–4371746 - | putative enoyl-CoA hydratase echA8 [Clostridium saccharobutylicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.