Assembly
ASM200617v2
BioProject PRJNA322791 · BioSample SAMN05170512
GENOME-RESOLVED EVIDENCE
GCA_002006175.2
Clostridium felsineum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5131990 bp · GC 30.000%
Completeness 100.000% · contamination 2.010%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRCLROS_027970 | URZ07459.1 | OG0000074 | CP096986.1:3046519–3047214 - | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium felsineum] |
| ldh_1CLROS_001220 | URZ04807.1 | OG0000131 | CP096986.1:131491–132432 + | L-lactate dehydrogenase [Clostridium felsineum] |
| ldh_2CLROS_040380 | URZ08656.1 | OG0000131 | CP096986.1:4385660–4386622 - | L-lactate dehydrogenase [Clostridium felsineum] |
| hbdCLROS_030810 | URZ07720.1 | OG0000229 | CP096986.1:3334328–3335176 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| mmgBCLROS_032410 | URZ07880.1 | OG0000229 | CP096986.1:3520718–3521557 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| thlACLROS_033190 | URZ07953.1 | OG0000234 | CP096986.1:3620569–3621747 - | Acetyl-CoA acetyltransferase [Clostridium felsineum] |
| crt_1CLROS_030850 | URZ07724.1 | OG0001394 | CP096986.1:3338248–3339033 - | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
| crt_2CLROS_034650 | URZ08099.1 | OG0016526 | CP096986.1:3770763–3771545 - | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.