Assembly
ASM200621v2
BioProject PRJNA322792 · BioSample SAMN05170513
GENOME-RESOLVED EVIDENCE
GCA_002006215.2
Clostridium felsineum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5208606 bp · GC 30.000%
Completeness 100.000% · contamination 2.010%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRCROST_032120 | URZ12490.1 | OG0000074 | CP096983.1:3477352–3478047 - | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium felsineum] |
| ldh_1CROST_005470 | URZ09848.1 | OG0000131 | CP096983.1:560167–561108 + | L-lactate dehydrogenase [Clostridium felsineum] |
| ldh_2CROST_044520 | URZ13686.1 | OG0000131 | CP096983.1:4816494–4817456 - | L-lactate dehydrogenase [Clostridium felsineum] |
| hbdCROST_034960 | URZ12751.1 | OG0000229 | CP096983.1:3765161–3766009 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| mmgBCROST_036560 | URZ12911.1 | OG0000229 | CP096983.1:3951551–3952390 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| thlACROST_037340 | URZ12984.1 | OG0000234 | CP096983.1:4051402–4052580 - | Acetyl-CoA acetyltransferase [Clostridium felsineum] |
| crt_1CROST_035000 | URZ12755.1 | OG0001394 | CP096983.1:3769081–3769866 - | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
| crt_2CROST_038800 | URZ13130.1 | OG0016526 | CP096983.1:4201596–4202378 - | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.