Assembly
ASM200623v2
BioProject PRJNA322793 · BioSample SAMN05170514
GENOME-RESOLVED EVIDENCE
GCA_002006235.2
Clostridium felsineum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5167919 bp · GC 30.000%
Completeness 100.000% · contamination 1.370%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRCLAUR_044160 | URZ04327.1 | OG0000074 | CP096988.1:4795698–4796393 + | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium felsineum] |
| ldh_1CLAUR_024600 | URZ02454.1 | OG0000131 | CP096988.1:2770580–2771521 - | L-lactate dehydrogenase [Clostridium felsineum] |
| ldh_2CLAUR_030550 | URZ03009.1 | OG0000131 | CP096988.1:3384555–3385517 + | L-lactate dehydrogenase [Clostridium felsineum] |
| mmgBCLAUR_012620 | URZ01273.1 | OG0000229 | CP096988.1:1388014–1388868 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| hbdCLAUR_040910 | URZ04025.1 | OG0000229 | CP096988.1:4478684–4479532 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum] |
| thlACLAUR_038020 | URZ03741.1 | OG0000234 | CP096988.1:4172230–4173408 + | Acetyl-CoA acetyltransferase [Clostridium felsineum] |
| lldPCLAUR_041100 | URZ04044.1 | OG0001228 | CP096988.1:4500743–4502344 + | L-lactate permease [Clostridium felsineum] |
| crt_2CLAUR_040870 | URZ04021.1 | OG0001394 | CP096988.1:4474826–4475611 + | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
| crt_1CLAUR_036460 | URZ03585.1 | OG0016526 | CP096988.1:4013610–4014392 + | Short-chain-enoyl-CoA hydratase [Clostridium felsineum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.