Assembly
ASM200635v2
BioProject PRJNA322790 · BioSample SAMN05170511
GENOME-RESOLVED EVIDENCE
GCA_002006355.2
Clostridium felsineum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5242194 bp · GC 30.000%
Completeness 100.000% · contamination 1.830%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRCLFE_032040 | URZ17152.1 | OG0000074 | CP096980.1:3343823–3344518 - | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium felsineum DSM 794] |
| ldh_1CLFE_003580 | URZ14361.1 | OG0000131 | CP096980.1:352230–353192 + | L-lactate dehydrogenase [Clostridium felsineum DSM 794] |
| ldh_2CLFE_043080 | URZ18244.1 | OG0000131 | CP096980.1:4634927–4635868 - | L-lactate dehydrogenase [Clostridium felsineum DSM 794] |
| mmgBCLFE_011200 | URZ15102.1 | OG0000229 | CP096980.1:1169602–1170441 + | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum DSM 794] |
| hbdCLFE_013030 | URZ15285.1 | OG0000229 | CP096980.1:1392676–1393524 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium felsineum DSM 794] |
| thlACLFE_010380 | URZ15025.1 | OG0000234 | CP096980.1:1079630–1080808 + | Acetyl-CoA acetyltransferase [Clostridium felsineum DSM 794] |
| crt_2CLFE_012990 | URZ15281.1 | OG0001394 | CP096980.1:1388818–1389603 + | Short-chain-enoyl-CoA hydratase [Clostridium felsineum DSM 794] |
| crt_1CLFE_009010 | URZ14888.1 | OG0016526 | CP096980.1:939140–939922 + | Short-chain-enoyl-CoA hydratase [Clostridium felsineum DSM 794] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.