Assembly
ASM207415v1
BioProject PRJNA302051 · BioSample SAMN04263500
GENOME-RESOLVED EVIDENCE
GCA_002074155.1
Clostridium argentinense · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4803058 bp · GC 29.000%
Completeness 100.000% · contamination 5.920%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ17_01830 | ARC83370.1 | OG0000061 | CP014176.1:234873–236222 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium argentinense] |
| ldhRSJ17_06980 | ARC84295.1 | OG0000131 | CP014176.1:1397951–1398907 + | L-lactate dehydrogenase [Clostridium argentinense] |
| accBRSJ17_01820 | ARC83368.1 | OG0000212 | CP014176.1:233791–234285 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium argentinense] |
| accBRSJ17_03290 | ARC83625.1 | OG0000212 | CP014176.1:573444–573827 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium argentinense] |
| hbdRSJ17_19845 | ARC86579.1 | OG0000229 | CP014176.1:4240030–4240878 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium argentinense] |
| thlRSJ17_07515 | ARC84390.1 | OG0000234 | CP014176.1:1508616–1509797 + | acetyl-CoA acetyltransferase [Clostridium argentinense] |
| adhERSJ17_04940 | ARC83921.1 | OG0000343 | CP014176.1:917699–920308 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium argentinense] |
| rnfARSJ17_11115 | ARC85021.1 | OG0001328 | CP014176.1:2322009–2322584 - | electron transport complex protein RnfA [Clostridium argentinense] |
| crtRSJ17_19865 | ARC86583.1 | OG0001394 | CP014176.1:4244422–4245201 - | crotonase [Clostridium argentinense] |
| crtRSJ17_19045 | ARC86436.1 | OG0003747 | CP014176.1:4042113–4042556 - | enoyl-CoA hydratase [Clostridium argentinense] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.