Assembly
SPACI
BioProject PRJNA310710 · BioSample SAMN04455122
GENOME-RESOLVED EVIDENCE
GCA_002257695.2
Sporomusa acidovorans DSM 3132 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5955502 bp · GC 44.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_093793992.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 131.100 / 0.97500 | Annotation: gene_symbol |
| accCWP_093793991.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 685.300 / 0.98900 | Annotation: gene_symbol |
| accCWP_093794010.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 588.500 / 0.99300 | Annotation: gene_symbol |
| adhEWP_093793650.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1220.400 / 0.99100 | Bridge orthogroup OG0002334 |
| bcdWP_093796965.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 567.700 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_093794530.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 469.700 / 0.99700 | Annotation: bcd_etfAB_neighborhood |
| coatWP_093793186.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 263.400 / 0.97200 | Annotation: specific_product_name |
| coatWP_093793185.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 99.300 / 0.77400 | Bridge orthogroup OG0000263 |
| etfAWP_093797366.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 463.900 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_093794532.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 462.500 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_093793734.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 459.600 / 0.99400 | Bridge orthogroup OG0001385 |
| etfAWP_093794337.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 441.200 / 0.97600 | Bridge orthogroup OG0002903 |
| etfAWP_093796969.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 432.000 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_093793735.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 388.200 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_093794531.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 384.700 / 0.99600 | Bridge orthogroup OG0001139 |
| etfBWP_093797363.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 376.800 / 0.99600 | Bridge orthogroup OG0001139 |
| etfBWP_093794336.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 372.300 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_093796967.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 362.400 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_093791859.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 389.100 / 0.98700 | Annotation: gene_symbol |
| fabFWP_093791854.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 664.500 / 0.99300 | Annotation: gene_symbol |
| fabFWP_093796251.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 595.500 / 0.98800 | Annotation: gene_symbol |
| fabGWP_093791857.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 278.600 / 0.99600 | Bridge orthogroup OG0000008 |
| fabHWP_093792979.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 259.800 / 0.98500 | Annotation: specific_product_name |
| fabHWP_093794383.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 255.400 / 0.98800 | Annotation: specific_product_name |
| fabHWP_211285257.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 238.400 / 0.98200 | Annotation: specific_product_name |
| fabKWP_093791861.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 483.300 / 0.98700 | Annotation: gene_symbol |
| fabZWP_211285145.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 159.300 / 0.76000 | Bridge orthogroup OG0000074 |
| hbdWP_093796221.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 333.800 / 0.98900 | Bridge orthogroup OG0000153 |
| hbdWP_093797344.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 266.000 / 0.98200 | Bridge orthogroup OG0000153 |
| lctPWP_093793517.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 434.000 / 0.99400 | Bridge orthogroup OG0000731 |
| ldhWP_093794054.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 316.700 / 0.99400 | Bridge orthogroup OG0001800 |
| rnfAWP_093794926.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 269.600 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_093794925.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 341.600 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_093794930.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 425.900 / 0.75700 | Bridge orthogroup OG0001114 |
| rnfDWP_093794929.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 503.000 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_093794927.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 285.400 / 0.96200 | Bridge orthogroup OG0001153 |
| rnfGWP_093794928.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 210.200 / 0.91200 | Bridge orthogroup OG0001292 |
| accCWP_093797372.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 515.500 / 0.98700 | Profile only |
| bcdWP_093796213.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 601.100 / 1.00000 | Profile only |
| bcdWP_093793189.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 592.300 / 1.00000 | Profile only |
| bcdWP_093795673.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 523.200 / 0.99700 | Profile only |
| bcdWP_093794654.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 497.000 / 0.99700 | Profile only |
| bcdWP_093792325.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 427.600 / 0.99500 | Profile only |
| bcdWP_093794517.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 405.500 / 0.99500 | Profile only |
| bcdWP_093792323.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 371.700 / 0.95300 | Profile only |
| crtWP_093793191.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 369.400 / 0.98800 | Annotation: specific_product_name |
| crtWP_093796215.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 365.100 / 0.99200 | Annotation: specific_product_name |
| etfAWP_093793193.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 240.300 / 0.92900 | Profile only |
| etfAWP_093795675.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 230.600 / 0.92900 | Profile only |
| etfAWP_093792319.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 226.500 / 0.92300 | Profile only |
| etfAWP_093796217.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 212.300 / 0.94600 | Profile only |
| etfBWP_093795674.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 191.800 / 0.89300 | Profile only |
| fabGWP_093794527.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.800 / 0.97200 | Profile only |
| fabGWP_093793662.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.800 / 0.99200 | Profile only |
| fabGWP_093797357.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.000 / 0.97600 | Profile only |
| fabGWP_093796472.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.100 / 0.98800 | Profile only |
| fabGWP_093792284.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.900 / 0.98400 | Profile only |
| fabGWP_093794280.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 140.000 / 0.99200 | Profile only |
| fabGWP_093796327.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 125.900 / 0.98000 | Profile only |
| fabHWP_093791862.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 348.200 / 0.99700 | Profile only |
| fabHWP_093794997.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 329.900 / 0.99700 | Profile only |
| fabHWP_093796342.1 · ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 211.100 / 0.89800 | Profile only |
| fabKWP_093796733.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 403.500 / 0.98400 | Profile only |
| fabKWP_093791856.1 · nitronate monooxygenase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 250.300 / 0.93000 | Profile only |
| fabLWP_093794527.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 223.300 / 0.97600 | Profile only |
| fabLWP_093797357.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.300 / 0.98000 | Profile only |
| fabLWP_093792284.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.600 / 0.96800 | Profile only |
| fabLWP_093793662.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.800 / 0.99200 | Profile only |
| fabLWP_093796472.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.200 / 0.98000 | Profile only |
| fabLWP_093796327.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 129.300 / 0.97200 | Profile only |
| fabLWP_093794280.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 122.700 / 0.97200 | Profile only |
| rnfCWP_245692786.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 518.900 / 0.98900 | Profile only |
| rnfCWP_093796664.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 495.300 / 0.98000 | Profile only |
| rnfCWP_093794728.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 473.200 / 0.99300 | Profile only |
| rnfCWP_093795808.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 470.100 / 0.99300 | Profile only |
| fabLWP_093791857.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 227.600 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.