Assembly
SPSIL
BioProject PRJNA310713 · BioSample SAMN04455153
GENOME-RESOLVED EVIDENCE
GCA_002257705.2
Sporomusa silvacetica DSM 10669 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6046356 bp · GC 43.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_094604582.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 135.800 / 0.97500 | Annotation: gene_symbol |
| accCWP_094604581.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 692.200 / 0.98900 | Annotation: gene_symbol |
| bcdWP_094605664.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 600.300 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_094603142.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 475.700 / 0.99700 | Annotation: bcd_etfAB_neighborhood |
| coatWP_094603124.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 275.200 / 1.00000 | Bridge orthogroup OG0004934 |
| coatWP_094603125.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 125.000 / 0.76500 | Bridge orthogroup OG0000263 |
| etfAWP_094602751.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 474.300 / 0.99400 | Bridge orthogroup OG0001385 |
| etfAWP_094605666.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 455.900 / 0.98200 | Bridge orthogroup OG0001385 |
| etfAWP_245867430.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 453.300 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_094605082.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 450.000 / 0.98800 | Bridge orthogroup OG0001385 |
| etfAWP_094606059.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 441.100 / 0.97300 | Bridge orthogroup OG0002903 |
| etfBWP_094605665.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 390.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_094605083.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 386.200 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_094602752.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 381.800 / 0.99600 | Bridge orthogroup OG0001139 |
| etfBWP_094603141.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 380.100 / 0.99600 | Bridge orthogroup OG0001139 |
| etfBWP_094606058.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 371.000 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_094605496.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 386.200 / 0.98700 | Annotation: gene_symbol |
| fabFWP_094605493.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 655.700 / 0.99300 | Annotation: gene_symbol |
| fabGWP_094605495.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 278.600 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_094605497.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 480.900 / 0.99000 | Annotation: gene_symbol |
| fabZWP_169717687.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 160.200 / 0.76500 | Bridge orthogroup OG0000074 |
| hbdWP_094602798.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 334.100 / 0.98900 | Bridge orthogroup OG0000153 |
| hbdWP_094604553.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 275.100 / 0.98200 | Bridge orthogroup OG0000153 |
| hbdWP_094605667.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 247.200 / 0.98900 | Bridge orthogroup OG0000153 |
| hbdWP_094603130.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 219.500 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_094604067.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 436.300 / 0.98400 | Bridge orthogroup OG0000731 |
| lctPWP_094605023.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 395.300 / 0.99000 | Bridge orthogroup OG0000731 |
| ldhWP_094604634.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 320.500 / 0.99700 | Bridge orthogroup OG0001800 |
| rnfAWP_245867554.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 270.000 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_094604768.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 338.200 / 0.92100 | Bridge orthogroup OG0001404 |
| rnfCWP_094604773.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 418.000 / 0.75300 | Bridge orthogroup OG0001114 |
| rnfDWP_094604772.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 492.600 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_094604770.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 276.000 / 0.95700 | Bridge orthogroup OG0001153 |
| rnfGWP_094604771.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 215.900 / 0.91200 | Bridge orthogroup OG0001292 |
| thlWP_094603127.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 505.800 / 0.99500 | Bridge orthogroup OG0000010 |
| thlWP_094607536.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 456.000 / 0.99200 | Bridge orthogroup OG0000010 |
| accCWP_094605369.1 · acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 576.700 / 0.99300 | Profile only |
| accCWP_211289544.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 525.600 / 0.98400 | Profile only |
| bcdWP_094606211.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 490.500 / 0.99700 | Profile only |
| bcdWP_094603149.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 397.000 / 0.99500 | Profile only |
| crtWP_373665328.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 376.500 / 0.99200 | Annotation: specific_product_name |
| crtWP_094607535.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 258.800 / 0.99200 | Annotation: specific_product_name |
| crtWP_169718009.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 252.300 / 0.99200 | Annotation: specific_product_name |
| fabGWP_211289675.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 227.700 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_094603579.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.000 / 0.98400 | Profile only |
| fabGWP_094607688.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 216.800 / 0.98000 | Profile only |
| fabGWP_094604405.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.100 / 0.98800 | Profile only |
| fabGWP_094603165.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.000 / 0.97200 | Profile only |
| fabGWP_094603680.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.700 / 0.97600 | Profile only |
| fabGWP_094606057.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.900 / 0.98800 | Profile only |
| fabGWP_094605221.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.100 / 0.98400 | Profile only |
| fabGWP_169717870.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 196.600 / 0.99200 | Profile only |
| fabGWP_094602630.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.300 / 0.97600 | Profile only |
| fabGWP_094607531.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.800 / 0.98800 | Profile only |
| fabGWP_094603681.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.400 / 0.98800 | Profile only |
| fabGWP_094602977.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.600 / 0.99200 | Profile only |
| fabGWP_094603128.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.900 / 0.98000 | Profile only |
| fabGWP_094605857.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.300 / 0.99200 | Profile only |
| fabGWP_094606412.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.900 / 0.98800 | Profile only |
| fabGWP_094605818.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.500 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_094605033.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.500 / 0.97600 | Profile only |
| fabGWP_094605903.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.200 / 0.96800 | Profile only |
| fabGWP_094604399.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.900 / 0.99200 | Profile only |
| fabGWP_094605166.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.400 / 0.75800 | Profile only |
| fabGWP_094606174.1 · oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 129.300 / 0.78200 | Bridge orthogroup OG0000242 |
| fabGWP_094604007.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.100 / 0.81500 | Profile only |
| fabGWP_094605780.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 110.200 / 0.73800 | Bridge orthogroup OG0000242 |
| fabHWP_094605498.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 344.000 / 0.99700 | Profile only |
| fabHWP_094603370.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 339.400 / 0.99100 | Profile only |
| fabKWP_094605494.1 · nitronate monooxygenase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 252.100 / 0.93300 | Profile only |
| fabLWP_094604405.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 250.700 / 0.98000 | Profile only |
| fabLWP_094603165.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.700 / 0.97600 | Profile only |
| fabLWP_094603579.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 216.000 / 0.96800 | Profile only |
| fabLWP_211289675.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.000 / 0.96000 | Profile only |
| fabLWP_094603680.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 207.500 / 0.99200 | Profile only |
| fabLWP_094605903.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.200 / 0.96000 | Profile only |
| fabLWP_094605857.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.000 / 0.98000 | Profile only |
| fabLWP_094602630.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.800 / 0.98000 | Profile only |
| fabLWP_094607688.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.700 / 0.99200 | Profile only |
| fabLWP_094602977.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.100 / 0.99200 | Profile only |
| fabLWP_094605033.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.500 / 0.99200 | Profile only |
| fabLWP_094606412.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.100 / 0.97200 | Profile only |
| fabLWP_094605221.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.800 / 0.98000 | Profile only |
| fabLWP_094605818.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.700 / 0.98800 | Profile only |
| fabLWP_169717870.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.100 / 0.98000 | Profile only |
| fabLWP_094606057.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.200 / 0.97200 | Profile only |
| fabLWP_094605166.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.100 / 0.74600 | Profile only |
| fabLWP_094607531.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.700 / 0.98400 | Profile only |
| fabLWP_094603128.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 162.900 / 0.98800 | Profile only |
| fabLWP_094603681.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.000 / 0.97200 | Profile only |
| fabLWP_094604399.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 137.800 / 0.98800 | Profile only |
| fabLWP_094604007.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.000 / 0.93700 | Profile only |
| fabLWP_094606174.1 · oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 118.100 / 0.80200 | Profile only |
| hbdWP_094602791.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.600 / 1.00000 | Profile only |
| hbdWP_094607533.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 369.400 / 0.99300 | Profile only |
| rnfCWP_094606995.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 586.100 / 0.98900 | Profile only |
| rnfCWP_094606872.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 502.400 / 0.98900 | Profile only |
| thlWP_094602792.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 611.500 / 0.99700 | Profile only |
| thlWP_094603123.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 608.400 / 0.99700 | Profile only |
| fabLWP_094605495.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 224.800 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.