GENOME-RESOLVED EVIDENCE

GCA_002285495.1

Clostridium isatidis · Complete Genome

View versioned NCBI assembly →

Assembly

ASM228549v1

BioProject PRJNA335982 · BioSample SAMN05468136

Quality metadata

Genome size 2869927 bp · GC 29.000%

Completeness 95.960% · contamination 1.550%

Pathway marker completeness

Module	Markers	Fraction	Call
bcd_etf_module	0/3	0.000	Partial/absent
ethanol_entry_support	1/1	1.000	Complete marker set
fatty_acid_biosynthesis_core	1/8	0.125	Partial/absent
lactate_entry_support	2/2	1.000	Complete marker set
reverse_beta_oxidation_core	0/4	0.000	Partial/absent
rnf_complex	0/6	0.000	Partial/absent

Detected markers

Marker	Function	Copies
adhE	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	1
accC	acetyl-CoA carboxylase biotin carboxylase	1
lctP	L-lactate permease	1
ldh	L-lactate dehydrogenase	1

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / protein	Confidence	Review status	Score / coverage	Supporting evidence
No profile-HMM predictions for this assembly.

Protein-level evidence

Gene	Protein	Orthogroup	Coordinates	Annotation
accCBEN51_08925	ASW43601.1	OG0000061	CP016786.1:1893603–1894946 -	acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium isatidis]
ldhBEN51_08745	ASW43566.1	OG0000131	CP016786.1:1858296–1859234 -	L-lactate dehydrogenase [Clostridium isatidis]
adhEBEN51_05880	ASW43019.1	OG0001124	CP016786.1:1245086–1247707 -	bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium isatidis]
lctPBEN51_10845	ASW43962.1	OG0001228	CP016786.1:2322254–2323792 -	lactate permease [Clostridium isatidis]

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.