Assembly
ASM231298v1
BioProject PRJNA403823 · BioSample SAMN07624709
GENOME-RESOLVED EVIDENCE
GCA_002312985.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3446916 bp · GC 28.500%
Completeness 97.960% · contamination 3.730%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCMR01_08100 | ATD48735.1 | OG0000061 | CP023410.1:1737980–1739332 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhCMR01_14610 | ATD49966.1 | OG0000131 | CP023410.1:3194053–3195006 + | L-lactate dehydrogenase [Clostridium perfringens] |
| hbdCMR01_02035 | ATD47593.1 | OG0000229 | CP023410.1:403136–403984 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlCMR01_02655 | ATD47689.1 | OG0000234 | CP023410.1:520938–522116 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| accDCMR01_08095 | ATD48734.1 | OG0000403 | CP023410.1:1737109–1737987 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium perfringens] |
| fabGCMR01_04045 | ATD47952.1 | OG0000449 | CP023410.1:831100–831846 + | 3-oxoacyl-ACP reductase [Clostridium perfringens] |
| accACMR01_08090 | ATD48733.1 | OG0000885 | CP023410.1:1736301–1737116 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium perfringens] |
| adhECMR01_00750 | ATD47365.1 | OG0001124 | CP023410.1:144156–146753 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPCMR01_13540 | ATD49773.1 | OG0001228 | CP023410.1:2946257–2947780 - | lactate permease [Clostridium perfringens] |
| crtCMR01_02015 | ATD47589.1 | OG0001394 | CP023410.1:399227–400009 + | crotonase [Clostridium perfringens] |
| crtCMR01_14650 | ATD49974.1 | OG0001639 | CP023410.1:3204878–3205654 - | crotonase [Clostridium perfringens] |
| fabGCMR01_08955 | ATD48903.1 | OG0002940 | CP023410.1:1920917–1921678 - | 3-oxoacyl-ACP reductase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.