Assembly
ASM232718v1
BioProject PRJNA356831 · BioSample SAMN06127796
GENOME-RESOLVED EVIDENCE
GCA_002327185.1
Clostridium chauvoei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2872664 bp · GC 28.500%
Completeness 97.620% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCBTM21_06765 | ATD57457.1 | OG0000061 | CP018624.1:1434797–1436149 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium chauvoei] |
| ldhBTM21_05280 | ATD57184.1 | OG0000131 | CP018624.1:1115234–1116184 - | L-lactate dehydrogenase [Clostridium chauvoei] |
| ldhBTM21_12830 | ATD58529.1 | OG0000131 | CP018624.1:2744953–2745903 - | L-lactate dehydrogenase [Clostridium chauvoei] |
| hbdBTM21_00340 | ATD56320.1 | OG0000229 | CP018624.1:77011–77859 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium chauvoei] |
| thlBTM21_00895 | ATD56398.1 | OG0000234 | CP018624.1:179509–180690 + | acetyl-CoA acetyltransferase [Clostridium chauvoei] |
| adhEBTM21_06745 | ATD57453.1 | OG0001124 | CP018624.1:1429485–1432115 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium chauvoei] |
| lctPBTM21_10555 | ATD58154.1 | OG0001228 | CP018624.1:2258826–2260346 - | lactate permease [Clostridium chauvoei] |
| crtBTM21_00320 | ATD56316.1 | OG0001394 | CP018624.1:73099–73881 + | crotonase [Clostridium chauvoei] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.