Assembly
ASM232720v1
BioProject PRJNA356831 · BioSample SAMN06127795
GENOME-RESOLVED EVIDENCE
GCA_002327205.1
Clostridium chauvoei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2889569 bp · GC 28.500%
Completeness 98.760% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCBTM20_06295 | ATD54864.1 | OG0000061 | CP018630.1:1385889–1387241 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium chauvoei] |
| ldhBTM20_01620 | ATD54018.1 | OG0000131 | CP018630.1:332614–333564 + | L-lactate dehydrogenase [Clostridium chauvoei] |
| ldhBTM20_07775 | ATD55143.1 | OG0000131 | CP018630.1:1705869–1706819 + | L-lactate dehydrogenase [Clostridium chauvoei] |
| hbdBTM20_12675 | ATD56011.1 | OG0000229 | CP018630.1:2744246–2745094 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium chauvoei] |
| thlBTM20_12120 | ATD55930.1 | OG0000234 | CP018630.1:2641410–2642591 - | acetyl-CoA acetyltransferase [Clostridium chauvoei] |
| adhEBTM20_06315 | ATD54868.1 | OG0001124 | CP018630.1:1389923–1392553 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium chauvoei] |
| lctPBTM20_02520 | ATD54165.1 | OG0001228 | CP018630.1:558500–560020 + | lactate permease [Clostridium chauvoei] |
| crtBTM20_12695 | ATD56015.1 | OG0001394 | CP018630.1:2748224–2749006 - | crotonase [Clostridium chauvoei] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.