Assembly
ASM244185v2
BioProject PRJNA412211 · BioSample SAMN07702432
GENOME-RESOLVED EVIDENCE
GCA_002441855.2
Eubacterium maltosivorans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4337501 bp · GC 48.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_058694978.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 142.600 / 0.98800 | Annotation: gene_symbol |
| accCWP_096919427.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 669.400 / 0.99100 | Annotation: gene_symbol |
| accDWP_096919428.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 383.300 / 0.95900 | Bridge orthogroup OG0000844 |
| crtWP_058695955.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 331.900 / 0.97300 | Bridge orthogroup OG0002531 |
| etfAWP_096919544.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 460.300 / 0.98500 | Bridge orthogroup OG0002903 |
| etfBWP_058694775.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 332.200 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_096920081.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 233.100 / 0.98100 | Bridge orthogroup OG0002348 |
| fabDWP_096919432.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 318.100 / 0.97800 | Annotation: gene_symbol |
| fabFWP_096919433.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 562.800 / 0.99300 | Annotation: gene_symbol |
| fabGWP_203226625.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 258.500 / 0.97200 | Bridge orthogroup OG0000008 |
| fabZWP_058694969.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 157.200 / 0.75400 | Bridge orthogroup OG0000074 |
| lctPWP_096919545.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 769.000 / 0.99400 | Bridge orthogroup OG0000731 |
| rnfAWP_013380941.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 285.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_096919614.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 326.100 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_058694148.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 396.400 / 0.75300 | Bridge orthogroup OG0001114 |
| rnfDWP_058694149.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 385.500 / 0.93500 | Bridge orthogroup OG0001182 |
| rnfEWP_058694151.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 280.600 / 0.96200 | Bridge orthogroup OG0001153 |
| rnfGWP_074617008.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 188.400 / 0.92800 | Bridge orthogroup OG0001292 |
| accAWP_058694975.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 369.100 / 0.97100 | Profile only |
| accCWP_096920159.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 527.000 / 0.98700 | Profile only |
| bcdWP_058695953.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 633.900 / 1.00000 | Profile only |
| bcdWP_167495295.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 624.200 / 0.99200 | Profile only |
| bcdWP_096919390.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 579.400 / 0.99700 | Profile only |
| etfAWP_013378880.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 449.400 / 0.98800 | Profile only |
| etfAWP_096920080.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 217.200 / 0.95200 | Profile only |
| etfBWP_058695952.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 357.300 / 1.00000 | Profile only |
| etfBWP_096920544.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 283.100 / 0.98100 | Profile only |
| fabGWP_058695227.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 246.200 / 1.00000 | Profile only |
| fabGWP_096920539.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.200 / 0.98800 | Profile only |
| fabGWP_096919828.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.800 / 0.98400 | Profile only |
| fabGWP_090410712.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.200 / 0.96000 | Bridge orthogroup OG0000008 |
| fabGWP_058693606.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.200 / 0.98400 | Profile only |
| fabGWP_074618424.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.300 / 0.98400 | Profile only |
| fabGWP_096920359.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.700 / 0.98000 | Profile only |
| fabGWP_243129373.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 95.100 / 0.82700 | Bridge orthogroup OG0000242 |
| fabHWP_096919429.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 281.200 / 0.98200 | Profile only |
| fabKWP_396133273.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 406.700 / 0.90800 | Profile only |
| fabLWP_203226625.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.700 / 0.97600 | Profile only |
| fabLWP_096920539.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.200 / 0.99200 | Profile only |
| fabLWP_058695227.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.300 / 0.96800 | Profile only |
| fabLWP_096919828.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.800 / 0.97600 | Profile only |
| fabLWP_074618424.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.000 / 0.98000 | Profile only |
| fabLWP_090410712.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.100 / 0.98000 | Profile only |
| fabLWP_096920359.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.400 / 0.97600 | Profile only |
| fabLWP_058693606.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.300 / 0.98000 | Profile only |
| hbdWP_074617392.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 390.800 / 0.98900 | Profile only |
| rnfCWP_058693390.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 563.500 / 0.99300 | Profile only |
| thlWP_013378875.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 606.200 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.