Assembly
ASM286574v1
BioProject PRJNA302049 · BioSample SAMN04263498
GENOME-RESOLVED EVIDENCE
GCA_002865745.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3945134 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ15_18725 | AUM89618.1 | OG0000061 | CP013843.1:3897986–3899332 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ15_10955 | AUM88187.1 | OG0000119 | CP013843.1:2340204–2341898 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ15_07980 | AUM87638.1 | OG0000131 | CP013843.1:1680732–1681688 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBRSJ15_18735 | AUM89620.1 | OG0000212 | CP013843.1:3899818–3900294 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdRSJ15_16515 | AUM89225.1 | OG0000229 | CP013843.1:3463985–3464815 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ15_16510 | AUM89224.1 | OG0000234 | CP013843.1:3462782–3463960 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accARSJ15_18715 | AUM89616.1 | OG0000885 | CP013843.1:3896211–3897050 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhERSJ15_01905 | AUM86505.1 | OG0001124 | CP013843.1:392521–395109 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ15_16735 | AUM89269.1 | OG0001208 | CP013843.1:3506942–3508201 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ15_05410 | AUM87152.1 | OG0001228 | CP013843.1:1128981–1130504 + | lactate permease [Clostridium botulinum] |
| crtRSJ15_16520 | AUM89226.1 | OG0001639 | CP013843.1:3464846–3465628 - | crotonase [Clostridium botulinum] |
| fabZRSJ15_10950 | AUM88186.1 | OG0004330 | CP013843.1:2338930–2340201 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.