Assembly
ASM286576v1
BioProject PRJNA302039 · BioSample SAMN04263490
GENOME-RESOLVED EVIDENCE
GCA_002865765.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3917597 bp · GC 28.500%
Completeness 98.980% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ5_18370 | AUM93124.1 | OG0000061 | CP013849.1:3871007–3872353 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ5_11115 | AUM91791.1 | OG0000119 | CP013849.1:2392179–2393873 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ5_07880 | AUM91197.1 | OG0000131 | CP013849.1:1708131–1709087 - | L-lactate dehydrogenase [Clostridium botulinum] |
| fabHRSJ5_18410 | AUM93132.1 | OG0000222 | CP013849.1:3877623–3878603 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdRSJ5_16135 | AUM92732.1 | OG0000229 | CP013849.1:3430385–3431215 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ5_16130 | AUM92731.1 | OG0000234 | CP013849.1:3429182–3430360 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| adhERSJ5_01925 | AUM90090.1 | OG0001124 | CP013849.1:433498–436086 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ5_16355 | AUM92775.1 | OG0001208 | CP013849.1:3473540–3474799 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ5_05385 | AUM90718.1 | OG0001228 | CP013849.1:1164804–1166327 + | lactate permease [Clostridium botulinum] |
| crtRSJ5_16140 | AUM92733.1 | OG0001639 | CP013849.1:3431235–3432017 - | crotonase [Clostridium botulinum] |
| fabZRSJ5_11110 | AUM91790.1 | OG0004330 | CP013849.1:2390905–2392176 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.