Assembly
ASM286578v1
BioProject PRJNA302045 · BioSample SAMN04263495
GENOME-RESOLVED EVIDENCE
GCA_002865785.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4318900 bp · GC 28.000%
Completeness 93.640% · contamination 2.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ11_20430 | AUM97373.1 | OG0000061 | CP013701.1:4003900–4005246 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sporogenes] |
| fabZRSJ11_12905 | AUM96007.1 | OG0000119 | CP013701.1:2472950–2474644 + | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| ldhRSJ11_09740 | AUM95416.1 | OG0000131 | CP013701.1:1755997–1756953 - | L-lactate dehydrogenase [Clostridium sporogenes] |
| hbdRSJ11_18195 | AUM96980.1 | OG0000229 | CP013701.1:3561028–3561858 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sporogenes] |
| thlRSJ11_18190 | AUM96979.1 | OG0000234 | CP013701.1:3559825–3561003 - | acetyl-CoA acetyltransferase [Clostridium sporogenes] |
| adhERSJ11_03365 | AUM94245.1 | OG0001124 | CP013701.1:387289–389877 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sporogenes] |
| fabZRSJ11_18410 | AUM97022.1 | OG0001208 | CP013701.1:3603239–3604498 - | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| crtRSJ11_18200 | AUM96981.1 | OG0001639 | CP013701.1:3561878–3562660 - | crotonase [Clostridium sporogenes] |
| fabZRSJ11_12900 | AUM96006.1 | OG0004330 | CP013701.1:2471676–2472947 + | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.