Assembly
ASM286580v1
BioProject PRJNA302047 · BioSample SAMN04263496
GENOME-RESOLVED EVIDENCE
GCA_002865805.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3914565 bp · GC 28.000%
Completeness 99.490% · contamination 0.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ13_18400 | AUN00856.1 | OG0000061 | CP013841.1:3857462–3858808 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ13_10995 | AUM99503.1 | OG0000119 | CP013841.1:2340362–2342056 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ13_08065 | AUM98965.1 | OG0000131 | CP013841.1:1695792–1696748 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBRSJ13_18410 | AUN00858.1 | OG0000212 | CP013841.1:3859294–3859770 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| fabHRSJ13_18440 | AUN00864.1 | OG0000222 | CP013841.1:3864080–3865060 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdRSJ13_16250 | AUN00478.1 | OG0000229 | CP013841.1:3430108–3430938 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ13_16245 | AUN00477.1 | OG0000234 | CP013841.1:3428905–3430083 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| fabGRSJ13_13470 | AUM99961.1 | OG0000440 | CP013841.1:2824182–2825036 - | 3-oxoacyl-ACP reductase [Clostridium botulinum] |
| adhERSJ13_02015 | AUM97861.1 | OG0001124 | CP013841.1:417267–419855 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ13_16470 | AUN00521.1 | OG0001208 | CP013841.1:3473066–3474325 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ13_05520 | AUM98483.1 | OG0001228 | CP013841.1:1150792–1152315 + | lactate permease [Clostridium botulinum] |
| rnfARSJ13_02155 | AUM97887.1 | OG0001328 | CP013841.1:450445–451023 + | electron transport complex protein RnfA [Clostridium botulinum] |
| crtRSJ13_16255 | AUN00479.1 | OG0001639 | CP013841.1:3430969–3431751 - | crotonase [Clostridium botulinum] |
| fabZRSJ13_10990 | AUM99502.1 | OG0004330 | CP013841.1:2339088–2340359 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.