Assembly
ASM286584v1
BioProject PRJNA302048 · BioSample SAMN04263497
GENOME-RESOLVED EVIDENCE
GCA_002865845.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4159640 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ14_19540 | AUN08762.1 | OG0000061 | CP013847.1:4069866–4071212 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ14_11670 | AUN07321.1 | OG0000119 | CP013847.1:2483888–2485579 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ14_08480 | AUN06740.1 | OG0000131 | CP013847.1:1793415–1794371 - | L-lactate dehydrogenase [Clostridium botulinum] |
| fabHRSJ14_19580 | AUN08770.1 | OG0000222 | CP013847.1:4076482–4077462 - | 3-oxoacyl-ACP synthase III [Clostridium botulinum] |
| hbdRSJ14_17220 | AUN08350.1 | OG0000229 | CP013847.1:3613592–3614422 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ14_17215 | AUN08349.1 | OG0000234 | CP013847.1:3612389–3613567 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accDRSJ14_19535 | AUN08761.1 | OG0000403 | CP013847.1:4068977–4069846 - | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium botulinum] |
| adhERSJ14_01955 | AUN05537.1 | OG0001124 | CP013847.1:434573–437161 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ14_17440 | AUN08393.1 | OG0001208 | CP013847.1:3656502–3657761 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ14_05530 | AUN06183.1 | OG0001228 | CP013847.1:1202818–1204341 + | lactate permease [Clostridium botulinum] |
| crtRSJ14_17225 | AUN08351.1 | OG0001639 | CP013847.1:3614442–3615224 - | crotonase [Clostridium botulinum] |
| fabZRSJ14_11665 | AUN07320.1 | OG0004330 | CP013847.1:2482614–2483885 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.