Assembly
ASM286588v1
BioProject PRJNA302041 · BioSample SAMN04263491
GENOME-RESOLVED EVIDENCE
GCA_002865885.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4084533 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ6_19650 | AUN12583.1 | OG0000061 | CP013850.1:4005074–4006420 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ6_09755 | AUN10773.1 | OG0000119 | CP013850.1:1978321–1980015 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ6_12970 | AUN11360.1 | OG0000131 | CP013850.1:2659720–2660676 + | L-lactate dehydrogenase [Clostridium botulinum] |
| accBRSJ6_19660 | AUN12585.1 | OG0000212 | CP013850.1:4006906–4007382 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdRSJ6_17435 | AUN12191.1 | OG0000229 | CP013850.1:3570950–3571780 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ6_17430 | AUN12190.1 | OG0000234 | CP013850.1:3569747–3570925 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accARSJ6_19640 | AUN12581.1 | OG0000885 | CP013850.1:4003299–4004138 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhERSJ6_01965 | AUN09320.1 | OG0001124 | CP013850.1:399716–402304 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ6_17655 | AUN12235.1 | OG0001208 | CP013850.1:3613907–3615166 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ6_05405 | AUN09959.1 | OG0001228 | CP013850.1:1125430–1126953 + | lactate permease [Clostridium botulinum] |
| crtRSJ6_17440 | AUN12192.1 | OG0001639 | CP013850.1:3571811–3572593 - | crotonase [Clostridium botulinum] |
| fabZRSJ6_09760 | AUN10774.1 | OG0004330 | CP013850.1:1980018–1981289 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.