Assembly
ASM286604v1
BioProject PRJNA302039 · BioSample SAMN04263502
GENOME-RESOLVED EVIDENCE
GCA_002866045.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4169506 bp · GC 28.000%
Completeness 99.490% · contamination 0.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCB2M06_18760 | AUN19521.1 | OG0000061 | CP014151.1:3881438–3882784 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZB2M06_11105 | AUN18115.1 | OG0000119 | CP014151.1:2359384–2361078 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhB2M06_08245 | AUN17581.1 | OG0000131 | CP014151.1:1720633–1721589 - | L-lactate dehydrogenase [Clostridium botulinum] |
| hbdB2M06_16385 | AUN19104.1 | OG0000229 | CP014151.1:3419479–3420309 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlB2M06_16380 | AUN19103.1 | OG0000234 | CP014151.1:3418276–3419454 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| adhEB2M06_02200 | AUN16467.1 | OG0001124 | CP014151.1:439385–441973 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZB2M06_16605 | AUN19147.1 | OG0001208 | CP014151.1:3462452–3463711 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPB2M06_05710 | AUN17102.1 | OG0001228 | CP014151.1:1177373–1178896 + | lactate permease [Clostridium botulinum] |
| crtB2M06_16390 | AUN19105.1 | OG0001639 | CP014151.1:3420340–3421122 - | crotonase [Clostridium botulinum] |
| fabZB2M06_11100 | AUN18114.1 | OG0004330 | CP014151.1:2358110–2359381 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.