Assembly
ASM286612v1
BioProject PRJNA302055 · BioSample SAMN04263506
GENOME-RESOLVED EVIDENCE
GCA_002866125.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4050477 bp · GC 28.000%
Completeness 99.350% · contamination 0.850%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ21_19310 | AUN27274.1 | OG0000061 | CP014219.1:3912792–3914138 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ21_11795 | AUN25894.1 | OG0000119 | CP014219.1:2375940–2377634 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ21_08470 | AUN25284.1 | OG0000131 | CP014219.1:1686331–1687287 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBRSJ21_19320 | AUN27276.1 | OG0000212 | CP014219.1:3914624–3915100 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdRSJ21_17100 | AUN26882.1 | OG0000229 | CP014219.1:3478799–3479629 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ21_17095 | AUN26881.1 | OG0000234 | CP014219.1:3477596–3478774 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accARSJ21_19300 | AUN27272.1 | OG0000885 | CP014219.1:3911017–3911856 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhERSJ21_02410 | AUN24148.1 | OG0001124 | CP014219.1:398997–401585 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ21_17320 | AUN26926.1 | OG0001208 | CP014219.1:3521755–3523014 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ21_05850 | AUN24787.1 | OG0001228 | CP014219.1:1124738–1126261 + | lactate permease [Clostridium botulinum] |
| crtRSJ21_17105 | AUN26883.1 | OG0001639 | CP014219.1:3479660–3480442 - | crotonase [Clostridium botulinum] |
| fabZRSJ21_11790 | AUN25893.1 | OG0004330 | CP014219.1:2374666–2375937 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.