Assembly
ASM286622v1
BioProject PRJNA302056 · BioSample SAMN04263507
GENOME-RESOLVED EVIDENCE
GCA_002866225.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4109153 bp · GC 28.000%
Completeness 99.490% · contamination 1.350%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRSJ22_19955 | AUN23572.1 | OG0000061 | CP014174.1:3981867–3983213 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| fabZRSJ22_11565 | AUN22040.1 | OG0000119 | CP014174.1:2332107–2333801 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| ldhRSJ22_08590 | AUN21495.1 | OG0000131 | CP014174.1:1683700–1684656 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBRSJ22_19965 | AUN23574.1 | OG0000212 | CP014174.1:3983699–3984175 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium botulinum] |
| hbdRSJ22_17475 | AUN23134.1 | OG0000229 | CP014174.1:3509403–3510233 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlRSJ22_17470 | AUN23133.1 | OG0000234 | CP014174.1:3508200–3509378 - | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| accARSJ22_19945 | AUN23570.1 | OG0000885 | CP014174.1:3980092–3980931 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium botulinum] |
| adhERSJ22_02545 | AUN20364.1 | OG0001124 | CP014174.1:398567–401155 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| fabZRSJ22_17960 | AUN23225.1 | OG0001208 | CP014174.1:3590719–3591978 - | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPRSJ22_05985 | AUN21002.1 | OG0001228 | CP014174.1:1124349–1125872 + | lactate permease [Clostridium botulinum] |
| crtRSJ22_17480 | AUN23135.1 | OG0001639 | CP014174.1:3510264–3511046 - | crotonase [Clostridium botulinum] |
| fabZRSJ22_11560 | AUN22039.1 | OG0004330 | CP014174.1:2330833–2332104 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.