Assembly
ASM289685v1
BioProject PRJNA388583 · BioSample SAMN07200985
GENOME-RESOLVED EVIDENCE
GCA_002896855.1
Clostridium thermosuccinogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4731216 bp · GC 41.500%
Completeness 97.810% · contamination 4.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCDO33_04100 | AUS95692.1 | OG0000131 | CP021850.1:920191–921141 + | L-lactate dehydrogenase [Clostridium thermosuccinogenes] |
| ldhCDO33_08375 | AUS96443.1 | OG0000131 | CP021850.1:1917995–1918945 - | L-lactate dehydrogenase [Clostridium thermosuccinogenes] |
| accBCDO33_07210 | AUS96241.1 | OG0000212 | CP021850.1:1666420–1666839 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium thermosuccinogenes] |
| adhECDO33_01310 | AUS95204.1 | OG0001124 | CP021850.1:296099–298735 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium thermosuccinogenes] |
| lctPCDO33_12610 | AUS97206.1 | OG0001228 | CP021850.1:2909702–2911273 - | lactate permease [Clostridium thermosuccinogenes] |
| fabGCDO33_03220 | AUS95536.1 | OG0001499 | CP021850.1:716456–717175 + | 3-oxoacyl-ACP reductase [Clostridium thermosuccinogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.