Assembly
ASM301363v1
BioProject PRJNA431690 · BioSample SAMN08398331
GENOME-RESOLVED EVIDENCE
GCA_003013635.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2811348 bp · GC 28.500%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCC3B72_11345 | AVP55703.1 | OG0000061 | CP027782.1:2335392–2336732 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldhC3B72_07460 | AVP54986.1 | OG0000131 | CP027782.1:1520827–1521777 - | L-lactate dehydrogenase [Clostridium tetani] |
| accBC3B72_06360 | AVP54776.1 | OG0000212 | CP027782.1:1293256–1293585 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| accBC3B72_11355 | AVP55705.1 | OG0000212 | CP027782.1:2337203–2337661 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tetani] |
| fabHC3B72_11385 | AVP55711.1 | OG0000222 | CP027782.1:2341819–2342823 - | 3-oxoacyl-ACP synthase III [Clostridium tetani] |
| hbdC3B72_11800 | AVP55783.1 | OG0000229 | CP027782.1:2433075–2433923 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlC3B72_10490 | AVP55546.1 | OG0000234 | CP027782.1:2160072–2161247 - | acetyl-CoA C-acetyltransferase [Clostridium tetani] |
| adhEC3B72_01335 | AVP53827.1 | OG0001124 | CP027782.1:271147–273777 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tetani] |
| lctPC3B72_04375 | AVP54399.1 | OG0001228 | CP027782.1:906351–907871 + | L-lactate permease [Clostridium tetani] |
| crtC3B72_05190 | AVP54551.1 | OG0001394 | CP027782.1:1052059–1052841 - | crotonase [Clostridium tetani] |
| crtC3B72_09625 | AVP55389.1 | OG0001639 | CP027782.1:1965981–1966757 + | crotonase [Clostridium tetani] |
| crtC3B72_13055 | AVP55998.1 | OG0003747 | CP027782.1:2676559–2676978 - | enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.