Assembly
ASM309617v1
BioProject PRJNA384321 · BioSample SAMN06834810
GENOME-RESOLVED EVIDENCE
GCA_003096175.1
Clostridium drakei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5695241 bp · GC 29.500%
Completeness 99.380% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 2 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 5 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 4 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCB9W14_22540 | AWI07132.1 | OG0000037 | CP020953.1:5065451–5066779 - | electron transport complex protein RnfC [Clostridium drakei] |
| accCB9W14_24240 | AWI07444.1 | OG0000061 | CP020953.1:5415721–5417067 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium drakei] |
| fabZB9W14_16350 | AWI06003.1 | OG0000119 | CP020953.1:3676638–3678314 - | 3-hydroxyacyl-ACP dehydratase [Clostridium drakei] |
| ldhB9W14_04735 | AWI03823.1 | OG0000131 | CP020953.1:1029053–1030042 + | L-lactate dehydrogenase [Clostridium drakei] |
| ldhB9W14_13395 | AWI05452.1 | OG0000131 | CP020953.1:3035567–3036523 + | L-lactate dehydrogenase [Clostridium drakei] |
| accBB9W14_18745 | AWI06446.1 | OG0000212 | CP020953.1:4230699–4230911 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium drakei] |
| accBB9W14_24250 | AWI07446.1 | OG0000212 | CP020953.1:5417551–5418057 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium drakei] |
| hbdB9W14_01130 | AWI03164.1 | OG0000229 | CP020953.1:255407–256252 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium drakei] |
| hbdB9W14_06500 | AWI04160.1 | OG0000229 | CP020953.1:1388554–1389399 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium drakei] |
| hbdB9W14_06720 | AWI04204.1 | OG0000229 | CP020953.1:1446838–1447683 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium drakei] |
| thlB9W14_01135 | AWI03165.1 | OG0000234 | CP020953.1:256312–257490 + | acetyl-CoA acetyltransferase [Clostridium drakei] |
| thlB9W14_06505 | AWI04161.1 | OG0000234 | CP020953.1:1389466–1390644 + | acetyl-CoA acetyltransferase [Clostridium drakei] |
| thlB9W14_06725 | AWI04205.1 | OG0000234 | CP020953.1:1447720–1448895 + | acetyl-CoA acetyltransferase [Clostridium drakei] |
| thlB9W14_22460 | AWI07117.1 | OG0000234 | CP020953.1:5047568–5048743 - | acetyl-CoA acetyltransferase [Clostridium drakei] |
| adhEB9W14_12495 | AWI05287.1 | OG0001124 | CP020953.1:2803039–2805669 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium drakei] |
| adhEB9W14_18215 | AWI06349.1 | OG0001124 | CP020953.1:4108592–4111213 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium drakei] |
| fabZB9W14_21765 | AWI07006.1 | OG0001208 | CP020953.1:4898637–4899896 - | 3-hydroxyacyl-ACP dehydratase [Clostridium drakei] |
| lctPB9W14_07260 | AWI04303.1 | OG0001228 | CP020953.1:1586700–1588208 + | lactate permease [Clostridium drakei] |
| lctPB9W14_15580 | AWI05859.1 | OG0001228 | CP020953.1:3508888–3510474 - | lactate permease [Clostridium drakei] |
| crtB9W14_01125 | AWI03163.1 | OG0001639 | CP020953.1:254572–255351 + | crotonase [Clostridium drakei] |
| crtB9W14_06495 | AWI04159.1 | OG0001639 | CP020953.1:1387695–1388474 + | crotonase [Clostridium drakei] |
| crtB9W14_06700 | AWI04200.1 | OG0001639 | CP020953.1:1440380–1441156 - | crotonase [Clostridium drakei] |
| crtB9W14_06705 | AWI04201.1 | OG0001639 | CP020953.1:1443113–1443889 + | crotonase [Clostridium drakei] |
| crtB9W14_06510 | AWI04162.1 | OG0003747 | CP020953.1:1390812–1391240 + | enoyl-CoA hydratase [Clostridium drakei] |
| fabGB9W14_16465 | AWI06026.1 | OG0004652 | CP020953.1:3701619–3702380 - | 3-oxoacyl-ACP reductase [Clostridium drakei] |
| fabGB9W14_21045 | AWI06878.1 | OG0004652 | CP020953.1:4737099–4737857 - | 3-oxoacyl-ACP reductase [Clostridium drakei] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.