Assembly
ASM312952v1
BioProject PRJNA470639 · BioSample SAMN09098632
GENOME-RESOLVED EVIDENCE
GCA_003129525.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4287191 bp · GC 29.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCDIC82_09395 | AWK51224.1 | OG0000061 | CP029329.1:2135746–2137098 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhDIC82_03200 | AWK50147.1 | OG0000131 | CP029329.1:790249–791196 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhDIC82_09075 | AWK51160.1 | OG0000131 | CP029329.1:2060356–2061309 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBDIC82_09385 | AWK51222.1 | OG0000212 | CP029329.1:2134786–2135304 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdDIC82_05880 | AWK50594.1 | OG0000229 | CP029329.1:1361769–1362617 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| hbdDIC82_18600 | AWK52882.1 | OG0000229 | CP029329.1:4123553–4124491 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| accDDIC82_09400 | AWK51225.1 | OG0000403 | CP029329.1:2137091–2137972 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium beijerinckii] |
| accADIC82_09405 | AWK51226.1 | OG0000885 | CP029329.1:2137965–2138783 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium beijerinckii] |
| lctPDIC82_12065 | AWK51706.1 | OG0001228 | CP029329.1:2704855–2706390 + | lactate permease [Clostridium beijerinckii] |
| crtDIC82_05860 | AWK50590.1 | OG0001394 | CP029329.1:1357616–1358401 + | crotonase [Clostridium beijerinckii] |
| crtDIC82_18230 | AWK52814.1 | OG0003747 | CP029329.1:4039862–4040278 - | enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.