Assembly
ASM320345v1
BioProject PRJNA422745 · BioSample SAMN08195748
GENOME-RESOLVED EVIDENCE
GCA_003203455.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3663932 bp · GC 28.000%
Completeness 98.660% · contamination 7.390%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCYK96_09750 | AWS25879.1 | OG0000061 | CP025501.1:2126199–2127551 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhCYK96_03495 | AWS24697.1 | OG0000131 | CP025501.1:695755–696708 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBCYK96_09740 | AWS25877.1 | OG0000212 | CP025501.1:2125274–2125765 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdCYK96_00465 | AWS24171.1 | OG0000229 | CP025501.1:82420–83268 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlCYK96_15545 | AWS26989.1 | OG0000234 | CP025501.1:3389686–3390864 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| accDCYK96_09755 | AWS25880.1 | OG0000403 | CP025501.1:2127544–2128422 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium perfringens] |
| adhECYK96_02060 | AWS24455.1 | OG0001124 | CP025501.1:394236–396833 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPCYK96_04580 | AWS24898.1 | OG0001228 | CP025501.1:950531–952054 + | L-lactate permease [Clostridium perfringens] |
| crtCYK96_00485 | AWS24175.1 | OG0001394 | CP025501.1:86395–87177 - | crotonase [Clostridium perfringens] |
| crtCYK96_03455 | AWS24689.1 | OG0001639 | CP025501.1:685097–685873 + | crotonase [Clostridium perfringens] |
| fabGCYK96_08905 | AWS25715.1 | OG0002940 | CP025501.1:1944453–1945214 + | 3-oxoacyl-ACP reductase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.