Assembly
ASM335094v1
BioProject PRJNA445216 · BioSample SAMN08771210
GENOME-RESOLVED EVIDENCE
GCA_003350945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3324072 bp · GC 28.500%
Completeness 97.730% · contamination 3.500%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCC8114_06745 | AXH52316.1 | OG0000061 | CP028149.1:1533367–1534719 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhC8114_00875 | AXH51212.1 | OG0000131 | CP028149.1:191891–192844 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBC8114_06735 | AXH52314.1 | OG0000212 | CP028149.1:1532442–1532933 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| fabHC8114_06715 | AXH52310.1 | OG0000222 | CP028149.1:1528415–1529389 + | 3-oxoacyl-ACP synthase III [Clostridium perfringens] |
| hbdC8114_13030 | AXH53494.1 | OG0000229 | CP028149.1:2914082–2914930 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlC8114_12355 | AXH53390.1 | OG0000234 | CP028149.1:2787986–2789164 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| accDC8114_06750 | AXH52317.1 | OG0000403 | CP028149.1:1534712–1535590 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium perfringens] |
| accAC8114_06755 | AXH52318.1 | OG0000885 | CP028149.1:1535583–1536398 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium perfringens] |
| adhEC8114_14330 | AXH53725.1 | OG0001124 | CP028149.1:3173991–3176588 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPC8114_01915 | AXH51405.1 | OG0001228 | CP028149.1:435926–437449 + | L-lactate permease [Clostridium perfringens] |
| crtC8114_13050 | AXH53498.1 | OG0001394 | CP028149.1:2918057–2918839 - | crotonase [Clostridium perfringens] |
| crtC8114_00835 | AXH51205.1 | OG0001639 | CP028149.1:181250–182026 + | crotonase [Clostridium perfringens] |
| fabGC8114_05940 | AXH52161.1 | OG0002940 | CP028149.1:1364800–1365561 + | 3-oxoacyl-ACP reductase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.