Assembly
ASM336790v1
BioProject PRJNA471687 · BioSample SAMN09213727
GENOME-RESOLVED EVIDENCE
GCA_003367905.1
Megasphaera stantonii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2652760 bp · GC 52.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_095629708.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 129.800 / 0.98100 | Annotation: gene_symbol |
| accCWP_107196155.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 656.100 / 0.99600 | Annotation: gene_symbol |
| coatWP_087478419.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 238.300 / 0.97700 | Annotation: specific_product_name |
| coatWP_087478420.1 · 3-oxoacid CoA-transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 89.800 / 0.66800 | Bridge orthogroup OG0000263 |
| etfBWP_087477537.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 359.900 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_107195651.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 340.200 / 0.97100 | Annotation: gene_symbol |
| fabFWP_107195652.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 610.000 / 0.99300 | Annotation: gene_symbol |
| fabGWP_087477717.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 285.800 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_087477695.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 137.100 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_107195941.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 311.000 / 0.98900 | Bridge orthogroup OG0000153 |
| hbdWP_198643504.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 204.300 / 0.72200 | Bridge orthogroup OG0000153 |
| lctPWP_107196702.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 633.400 / 0.98800 | Bridge orthogroup OG0000731 |
| lctPWP_414467294.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 539.600 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_087476784.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 278.200 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_087476785.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 312.000 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_095629173.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 397.100 / 0.76200 | Bridge orthogroup OG0001114 |
| rnfDWP_087476781.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 489.900 / 0.96200 | Bridge orthogroup OG0001182 |
| rnfEWP_087476783.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 305.800 / 0.98600 | Bridge orthogroup OG0001153 |
| rnfGWP_087476782.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 191.600 / 0.90700 | Bridge orthogroup OG0001292 |
| thlWP_087476889.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 635.100 / 0.99700 | Bridge orthogroup OG0005114 |
| thlWP_107196375.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 342.200 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_107195236.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 513.600 / 0.98700 | Profile only |
| bcdWP_095629411.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.500 / 1.00000 | Profile only |
| bcdWP_107195291.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 541.200 / 1.00000 | Profile only |
| bcdWP_087478521.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 530.400 / 1.00000 | Profile only |
| bcdWP_095629585.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 526.300 / 1.00000 | Profile only |
| bcdWP_087477803.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 508.000 / 1.00000 | Profile only |
| bcdWP_107196091.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 501.000 / 0.98900 | Profile only |
| bcdWP_232818734.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 481.600 / 0.98900 | Profile only |
| bcdWP_087477172.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 462.800 / 0.99500 | Profile only |
| bcdWP_107196747.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.600 / 0.99700 | Profile only |
| crtWP_087477467.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 383.100 / 1.00000 | Annotation: specific_product_name |
| crtWP_087478730.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 374.900 / 1.00000 | Annotation: specific_product_name |
| crtWP_107196093.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 371.700 / 1.00000 | Annotation: specific_product_name |
| crtWP_087478421.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.200 / 1.00000 | Annotation: specific_product_name |
| etfAWP_107195290.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 453.100 / 0.99400 | Profile only |
| etfAWP_087477098.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 336.200 / 0.97600 | Profile only |
| etfBWP_087477099.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 237.200 / 0.99600 | Profile only |
| fabGWP_095629500.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.300 / 0.98800 | Profile only |
| fabGWP_107196229.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.400 / 0.98000 | Profile only |
| fabGWP_414467277.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.600 / 0.98000 | Profile only |
| fabGWP_107195482.1 · oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.000 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_107195650.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 323.100 / 0.98200 | Profile only |
| fabKWP_198643463.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 221.700 / 0.93900 | Profile only |
| fabLWP_087477717.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 231.200 / 0.97200 | Profile only |
| fabLWP_095629500.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 223.600 / 0.98800 | Profile only |
| fabLWP_107196229.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.800 / 0.98000 | Profile only |
| fabLWP_414467277.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.400 / 0.98800 | Profile only |
| fabLWP_107195482.1 · oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 132.100 / 0.79800 | Profile only |
| hbdWP_087477468.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 420.000 / 0.99300 | Profile only |
| ldhWP_107195342.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 311.700 / 0.98100 | Profile only |
| ldhWP_107196480.1 · lactate/malate family dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 265.500 / 0.99100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.